Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EW029_RS11115 Genome accession   NZ_LR130513
Coordinates   2170181..2170576 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2900 isolate BPH2900     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2165181..2175576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW029_RS11090 thiE 2165780..2166421 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  EW029_RS11095 thiM 2166423..2167214 (-) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  EW029_RS11100 thiD 2167198..2168028 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EW029_RS11105 tenA 2168021..2168710 (-) 690 WP_000396069.1 thiaminase II -
  EW029_RS11110 sceD 2169097..2169792 (-) 696 WP_000752002.1 lytic transglycosylase SceD -
  EW029_RS11115 ssb 2170181..2170576 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  EW029_RS11120 - 2170770..2171210 (+) 441 WP_000846750.1 YwpF-like family protein -
  EW029_RS11125 fabZ 2171268..2171708 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EW029_RS11130 murA 2171742..2173007 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EW029_RS11135 - 2173118..2173351 (-) 234 WP_000384523.1 DUF1146 family protein -
  EW029_RS11140 - 2173483..2173575 (-) 93 WP_031789435.1 hypothetical protein -
  EW029_RS11150 - 2174027..2174431 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1116879 EW029_RS11115 WP_000932694.1 2170181..2170576(-) (ssb) [Staphylococcus aureus strain BPH2900 isolate BPH2900]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1116879 EW029_RS11115 WP_000932694.1 2170181..2170576(-) (ssb) [Staphylococcus aureus strain BPH2900 isolate BPH2900]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment