Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   EW029_RS02620 Genome accession   NZ_LR130513
Coordinates   547644..548213 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2900 isolate BPH2900     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 542644..553213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW029_RS02595 cysE 543857..544504 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  EW029_RS02600 cysS 544488..545888 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  EW029_RS02605 - 545881..546285 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  EW029_RS02610 rlmB 546293..547039 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  EW029_RS02615 - 547039..547563 (+) 525 WP_000664732.1 NYN domain-containing protein -
  EW029_RS02620 sigH 547644..548213 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  EW029_RS02625 rpmG 548328..548471 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  EW029_RS02630 secE 548527..548709 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  EW029_RS02635 nusG 548722..549270 (+) 549 WP_001288298.1 transcription termination/antitermination protein NusG -
  EW029_RS02640 rplK 549451..549873 (+) 423 WP_001085795.1 50S ribosomal protein L11 -
  EW029_RS02645 rplA 550081..550773 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  EW029_RS02655 rplJ 551045..551545 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  EW029_RS02660 rplL 551588..551956 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  EW029_RS02665 - 552131..552739 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=1116848 EW029_RS02620 WP_000872873.1 547644..548213(+) (sigH) [Staphylococcus aureus strain BPH2900 isolate BPH2900]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1116848 EW029_RS02620 WP_000872873.1 547644..548213(+) (sigH) [Staphylococcus aureus strain BPH2900 isolate BPH2900]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment