Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EW030_RS10680 Genome accession   NZ_LR130511
Coordinates   2079335..2079730 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2819 isolate BPH2819     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2074335..2084730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW030_RS10655 thiE 2074934..2075575 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  EW030_RS10660 thiM 2075577..2076368 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  EW030_RS10665 thiD 2076352..2077182 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EW030_RS10670 tenA 2077175..2077864 (-) 690 WP_000396077.1 thiaminase II -
  EW030_RS10675 sceD 2078251..2078946 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  EW030_RS10680 ssb 2079335..2079730 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  EW030_RS10685 - 2079924..2080364 (+) 441 WP_000846746.1 YwpF-like family protein -
  EW030_RS10690 fabZ 2080422..2080862 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EW030_RS10695 murA 2080896..2082161 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EW030_RS10700 - 2082272..2082505 (-) 234 WP_000384523.1 DUF1146 family protein -
  EW030_RS10705 - 2082637..2082729 (-) 93 WP_001790611.1 hypothetical protein -
  EW030_RS10710 - 2083067..2083471 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1116836 EW030_RS10680 WP_000932694.1 2079335..2079730(-) (ssb) [Staphylococcus aureus strain BPH2819 isolate BPH2819]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1116836 EW030_RS10680 WP_000932694.1 2079335..2079730(-) (ssb) [Staphylococcus aureus strain BPH2819 isolate BPH2819]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment