Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EW032_RS10555 Genome accession   NZ_LR130509
Coordinates   2068505..2068900 (-) Length   131 a.a.
NCBI ID   WP_000932692.1    Uniprot ID   A0A641A2P1
Organism   Staphylococcus aureus strain BPH2760 isolate BPH2760     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2063505..2073900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW032_RS10525 thiE 2063967..2064608 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  EW032_RS10530 thiM 2064601..2065401 (-) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  EW032_RS10535 thiD 2065385..2066215 (-) 831 WP_129621289.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EW032_RS10540 tenA 2066208..2066897 (-) 690 WP_000396077.1 thiaminase II -
  EW032_RS10550 sceD 2067421..2068116 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  EW032_RS10555 ssb 2068505..2068900 (-) 396 WP_000932692.1 single-stranded DNA-binding protein Machinery gene
  EW032_RS10560 - 2069094..2069534 (+) 441 WP_000846746.1 YwpF-like family protein -
  EW032_RS10565 fabZ 2069592..2070032 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EW032_RS10570 murA 2070066..2071331 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EW032_RS10575 - 2071442..2071675 (-) 234 WP_000384523.1 DUF1146 family protein -
  EW032_RS10580 - 2071807..2071899 (-) 93 WP_031864518.1 hypothetical protein -
  EW032_RS10585 - 2072237..2072641 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15114.16 Da        Isoelectric Point: 5.2452

>NTDB_id=1116794 EW032_RS10555 WP_000932692.1 2068505..2068900(-) (ssb) [Staphylococcus aureus strain BPH2760 isolate BPH2760]
MLNKIVIVERLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1116794 EW032_RS10555 WP_000932692.1 2068505..2068900(-) (ssb) [Staphylococcus aureus strain BPH2760 isolate BPH2760]
ATGCTAAATAAAATCGTAATTGTCGAGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

100

100

1
  ssb Staphylococcus aureus N315

99.237

100

0.992

Multiple sequence alignment