Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EW032_RS06145 Genome accession   NZ_LR130509
Coordinates   1212743..1213615 (+) Length   290 a.a.
NCBI ID   WP_145986334.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2760 isolate BPH2760     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1207743..1218615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW032_RS06125 sucC 1207857..1209023 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  EW032_RS06130 sucD 1209045..1209953 (+) 909 WP_000110251.1 succinate--CoA ligase subunit alpha -
  EW032_RS06135 - 1210180..1211298 (+) 1119 WP_063456310.1 LysM peptidoglycan-binding domain-containing protein -
  EW032_RS06140 fmhC 1211326..1212570 (+) 1245 WP_000672867.1 FemA/FemB family glycyltransferase FmhC -
  EW032_RS06145 dprA 1212743..1213615 (+) 873 WP_145986334.1 DNA-processing protein DprA Machinery gene
  EW032_RS06150 topA 1213789..1215864 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  EW032_RS06155 trmFO 1216020..1217327 (+) 1308 WP_129621158.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33504.89 Da        Isoelectric Point: 9.5094

>NTDB_id=1116770 EW032_RS06145 WP_145986334.1 1212743..1213615(+) (dprA) [Staphylococcus aureus strain BPH2760 isolate BPH2760]
MIKLFLLKLYWAHSSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1116770 EW032_RS06145 WP_145986334.1 1212743..1213615(+) (dprA) [Staphylococcus aureus strain BPH2760 isolate BPH2760]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTCTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA Staphylococcus aureus N315

99.31

100

0.993

Multiple sequence alignment