Detailed information    

insolico Bioinformatically predicted

Overview


Name   comS   Type   Regulator
Locus tag   EW024_RS09560 Genome accession   NZ_LR130237
Coordinates   55345..55440 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SP444 isolate SP444     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context


Location: 50345..60440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW024_RS00330 - 51533..52417 (+) 885 WP_011528141.1 HNH endonuclease -
  EW024_RS00335 purB 52926..54218 (+) 1293 WP_011528142.1 adenylosuccinate lyase -
  EW024_RS00340 comR 54350..55261 (+) 912 WP_011528143.1 transcriptional regulator Rgg4/ComR Regulator
  EW024_RS09560 comS 55345..55440 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  EW024_RS00345 ruvB 55487..56485 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  EW024_RS00350 - 56623..57060 (+) 438 WP_002987727.1 low molecular weight protein-tyrosine-phosphatase -
  EW024_RS00355 - 57084..57485 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  EW024_RS00360 - 57482..59257 (+) 1776 WP_011528145.1 acyltransferase family protein -

Sequence


Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=1116591 EW024_RS09560 WP_198462994.1 55345..55440(+) (comS) [Streptococcus pyogenes strain SP444 isolate SP444]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=1116591 EW024_RS09560 WP_198462994.1 55345..55440(+) (comS) [Streptococcus pyogenes strain SP444 isolate SP444]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1

  comS Streptococcus pyogenes MGAS315

45.161

100

0.452


Multiple sequence alignment