Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   EQB41_RS02810 Genome accession   NZ_LR129840
Coordinates   505923..506654 (+) Length   243 a.a.
NCBI ID   WP_127820732.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4496 isolate 4496     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 500923..511654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB41_RS02785 - 502686..503039 (+) 354 WP_000115730.1 hypothetical protein -
  EQB41_RS02790 dnaJ 503244..504380 (+) 1137 WP_001836079.1 molecular chaperone DnaJ -
  EQB41_RS11760 - 504702..504986 (-) 285 WP_001845431.1 hypothetical protein -
  EQB41_RS02800 - 505148..505435 (-) 288 WP_000777760.1 hypothetical protein -
  EQB41_RS02805 - 505445..505855 (-) 411 WP_001278301.1 HIT family protein -
  EQB41_RS02810 pptA 505923..506654 (+) 732 WP_127820732.1 ABC transporter ATP-binding protein Regulator
  EQB41_RS02815 - 506651..507700 (+) 1050 WP_000653767.1 ABC transporter permease -
  EQB41_RS02820 - 507868..508197 (-) 330 WP_127820733.1 helicase BlpT -
  EQB41_RS02825 - 508473..508811 (+) 339 WP_000682133.1 LytTR family DNA-binding domain-containing protein -
  EQB41_RS02830 comE/blpR 508816..509553 (+) 738 WP_001219122.1 response regulator transcription factor Regulator
  EQB41_RS02835 - 509566..510906 (+) 1341 WP_127820734.1 sensor histidine kinase -
  EQB41_RS02840 blpC 510977..511105 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7737

>NTDB_id=1116179 EQB41_RS02810 WP_127820732.1 505923..506654(+) (pptA) [Streptococcus pneumoniae strain 4496 isolate 4496]
MLEIKNLTGGYVHVPVLKDVSFTIESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1116179 EQB41_RS02810 WP_127820732.1 505923..506654(+) (pptA) [Streptococcus pneumoniae strain 4496 isolate 4496]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTATTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGCCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment