Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   E0E10_RS03395 Genome accession   NZ_LR027878
Coordinates   653583..654152 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2003 isolate BPH2003     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 648583..659152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E10_RS03370 cysE 649796..650443 (+) 648 WP_001838365.1 serine O-acetyltransferase -
  E0E10_RS03375 cysS 650427..651827 (+) 1401 WP_000631964.1 cysteine--tRNA ligase -
  E0E10_RS03380 - 651820..652224 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  E0E10_RS03385 rlmB 652232..652978 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E0E10_RS03390 - 652978..653502 (+) 525 WP_000664738.1 NYN domain-containing protein -
  E0E10_RS03395 sigH 653583..654152 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  E0E10_RS03400 rpmG 654267..654410 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  E0E10_RS03405 secE 654466..654648 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  E0E10_RS03410 nusG 654661..655209 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  E0E10_RS03415 rplK 655390..655812 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  E0E10_RS03420 rplA 656020..656712 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  E0E10_RS03430 rplJ 656984..657484 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  E0E10_RS03435 rplL 657527..657895 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  E0E10_RS03440 - 658070..658678 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=1116033 E0E10_RS03395 WP_000872873.1 653583..654152(+) (sigH) [Staphylococcus aureus strain BPH2003 isolate BPH2003]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1116033 E0E10_RS03395 WP_000872873.1 653583..654152(+) (sigH) [Staphylococcus aureus strain BPH2003 isolate BPH2003]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment