Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   E0E14_RS02890 Genome accession   NZ_LR027877
Coordinates   580552..581121 (+) Length   189 a.a.
NCBI ID   WP_130828135.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate BPH3244     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 575552..586121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E14_RS02865 cysE 576765..577412 (+) 648 WP_001838365.1 serine O-acetyltransferase -
  E0E14_RS02870 cysS 577396..578796 (+) 1401 WP_000631964.1 cysteine--tRNA ligase -
  E0E14_RS02875 - 578789..579193 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  E0E14_RS02880 rlmB 579201..579947 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E0E14_RS02885 - 579947..580471 (+) 525 WP_000664738.1 NYN domain-containing protein -
  E0E14_RS02890 sigH 580552..581121 (+) 570 WP_130828135.1 sigma-70 family RNA polymerase sigma factor Regulator
  E0E14_RS02895 rpmG 581236..581379 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  E0E14_RS02900 secE 581435..581617 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  E0E14_RS02905 nusG 581630..582178 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  E0E14_RS02910 rplK 582359..582781 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  E0E14_RS02915 rplA 582989..583681 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  E0E14_RS02925 rplJ 583953..584453 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  E0E14_RS02930 rplL 584496..584864 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  E0E14_RS02935 - 585039..585647 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22956.84 Da        Isoelectric Point: 9.5313

>NTDB_id=1115990 E0E14_RS02890 WP_130828135.1 580552..581121(+) (sigH) [Staphylococcus aureus isolate BPH3244]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKGKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1115990 E0E14_RS02890 WP_130828135.1 580552..581121(+) (sigH) [Staphylococcus aureus isolate BPH3244]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGGGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment