Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E0E12_RS11925 Genome accession   NZ_LR027876
Coordinates   2252359..2252754 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JKD6009 isolate JKD6009     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2247359..2257754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E12_RS11900 thiE 2247959..2248600 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  E0E12_RS11905 thiM 2248602..2249393 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  E0E12_RS11910 thiD 2249377..2250207 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  E0E12_RS11915 tenA 2250200..2250889 (-) 690 WP_000396077.1 thiaminase II -
  E0E12_RS11920 sceD 2251275..2251970 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  E0E12_RS11925 ssb 2252359..2252754 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  E0E12_RS11930 - 2252948..2253388 (+) 441 WP_000846746.1 YwpF-like family protein -
  E0E12_RS11935 fabZ 2253447..2253887 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  E0E12_RS11940 murA 2253921..2255186 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  E0E12_RS11945 - 2255297..2255530 (-) 234 WP_000384523.1 DUF1146 family protein -
  E0E12_RS11950 - 2255662..2255754 (-) 93 WP_001790611.1 hypothetical protein -
  E0E12_RS11955 - 2256092..2256496 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1115978 E0E12_RS11925 WP_000932694.1 2252359..2252754(-) (ssb) [Staphylococcus aureus strain JKD6009 isolate JKD6009]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1115978 E0E12_RS11925 WP_000932694.1 2252359..2252754(-) (ssb) [Staphylococcus aureus strain JKD6009 isolate JKD6009]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment