Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E0E13_RS12220 Genome accession   NZ_LR027874
Coordinates   2325360..2325755 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2056 isolate BPH2056     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2320360..2330755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E13_RS12195 thiE 2320960..2321601 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  E0E13_RS12200 thiM 2321603..2322394 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  E0E13_RS12205 thiD 2322378..2323208 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  E0E13_RS12210 tenA 2323201..2323890 (-) 690 WP_000396077.1 thiaminase II -
  E0E13_RS12215 sceD 2324276..2324971 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  E0E13_RS12220 ssb 2325360..2325755 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  E0E13_RS12225 - 2325949..2326389 (+) 441 WP_000846746.1 YwpF-like family protein -
  E0E13_RS12230 fabZ 2326448..2326888 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  E0E13_RS12235 murA 2326922..2328187 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  E0E13_RS12240 - 2328298..2328531 (-) 234 WP_000384523.1 DUF1146 family protein -
  E0E13_RS12245 - 2328663..2328755 (-) 93 WP_001790611.1 hypothetical protein -
  E0E13_RS12250 - 2329093..2329497 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1115934 E0E13_RS12220 WP_000932694.1 2325360..2325755(-) (ssb) [Staphylococcus aureus strain BPH2056 isolate BPH2056]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1115934 E0E13_RS12220 WP_000932694.1 2325360..2325755(-) (ssb) [Staphylococcus aureus strain BPH2056 isolate BPH2056]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment