Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E0E13_RS08240 Genome accession   NZ_LR027874
Coordinates   1630907..1631353 (-) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2056 isolate BPH2056     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1625907..1636353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E13_RS08210 gcvPA 1626833..1628179 (-) 1347 WP_000019684.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  E0E13_RS08215 gcvT 1628199..1629290 (-) 1092 WP_000093351.1 glycine cleavage system aminomethyltransferase GcvT -
  E0E13_RS08220 - 1629449..1629973 (-) 525 WP_001015117.1 shikimate kinase -
  E0E13_RS08225 - 1629963..1630109 (-) 147 WP_001789879.1 hypothetical protein -
  E0E13_RS08230 comGF 1630206..1630703 (-) 498 WP_001803317.1 competence type IV pilus minor pilin ComGF Machinery gene
  E0E13_RS08235 comGE 1630621..1630920 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  E0E13_RS08240 comGD 1630907..1631353 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  E0E13_RS08245 comGC 1631331..1631642 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  E0E13_RS08250 comGB 1631656..1632726 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  E0E13_RS08255 comGA 1632698..1633672 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  E0E13_RS08260 - 1633724..1634347 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  E0E13_RS08265 - 1634344..1634673 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E0E13_RS08270 - 1634673..1635659 (-) 987 WP_000161314.1 ROK family glucokinase -
  E0E13_RS08275 - 1635656..1635859 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=1115916 E0E13_RS08240 WP_001790850.1 1630907..1631353(-) (comGD) [Staphylococcus aureus strain BPH2056 isolate BPH2056]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1115916 E0E13_RS08240 WP_001790850.1 1630907..1631353(-) (comGD) [Staphylococcus aureus strain BPH2056 isolate BPH2056]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment