Detailed information NTG1115874

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: E0E08_RS08400
• Genome accession: NZ_LR027873
• Coordinates: 1660534..1660980 (-)
• Length: 148 a.a.
• NCBI ID: WP_001790850.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain BPH2070 isolate BPH2070
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1661574..1662746	1660534..1660980	flank	594

Gene organization within MGE regions

Location: 1660534..1662746

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E0E08_RS08400	comGD	1660534..1660980 (-)	447	WP_001790850.1	competence type IV pilus minor pilin ComGD	Machinery gene
E0E08_RS08405	comGC	1660958..1661269 (-)	312	WP_000472256.1	competence type IV pilus major pilin ComGC	Machinery gene
E0E08_RS08410	comGB	1661283..1661588 (-)	306	WP_332005405.1	type II secretion system F family protein	Machinery gene
E0E08_RS08415	-	1661574..1662746 (+)	1173	WP_000195429.1	IS256-like element IS256 family transposase	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17213.42 Da
• Isoelectric Point: 10.3682

>NTDB_id=1115874 E0E08_RS08400 WP_001790850.1 1660534..1660980(-) (comGD) [Staphylococcus aureus strain BPH2070 isolate BPH2070]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide

• Length: 447 bp

>NTDB_id=1115874 E0E08_RS08400 WP_001790850.1 1660534..1660980(-) (comGD) [Staphylococcus aureus strain BPH2070 isolate BPH2070]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Staphylococcus aureus MW2	99.324	100	0.993
comGD	Staphylococcus aureus N315	99.324	100	0.993