Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   E0E08_RS08410 Genome accession   NZ_LR027873
Coordinates   1661283..1661588 (-) Length   101 a.a.
NCBI ID   WP_332005405.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2070 isolate BPH2070     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1661574..1662746 1661283..1661588 flank -14


Gene organization within MGE regions


Location: 1661283..1662746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E08_RS08410 comGB 1661283..1661588 (-) 306 WP_332005405.1 type II secretion system F family protein Machinery gene
  E0E08_RS08415 - 1661574..1662746 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12047.92 Da        Isoelectric Point: 10.6647

>NTDB_id=1115876 E0E08_RS08410 WP_332005405.1 1661283..1661588(-) (comGB) [Staphylococcus aureus strain BPH2070 isolate BPH2070]
MYLGHVKVLLGMFLSLKTLYRKRTVIWPFYFYTIIRTLSKRGKLEVELKLYSQILVKQIEDKAIKQTQFLQPILFLILGL
FIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 306 bp        

>NTDB_id=1115876 E0E08_RS08410 WP_332005405.1 1661283..1661588(-) (comGB) [Staphylococcus aureus strain BPH2070 isolate BPH2070]
ATGTACTTGGGTCATGTAAAAGTCCTCCTGGGTATGTTTTTGTCGTTAAAAACATTGTACCGTAAAAGGACTGTTATATG
GCCTTTTTACTTTTACACAATTATACGGACTTTATCAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAA
TATTAGTAAAACAAATAGAAGATAAAGCGATAAAACAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTA
TTTATTGTCGCAATTTATTTAGTAATTATGTTACCAATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(23-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

98.413

62.376

0.614
  comGB Staphylococcus aureus N315

98.413

62.376

0.614

Multiple sequence alignment