Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E0E15_RS11505 Genome accession   NZ_LR027870
Coordinates   2206651..2207046 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2019 isolate BPH2019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2201651..2212046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E15_RS11480 thiE 2202251..2202892 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  E0E15_RS11485 thiM 2202894..2203685 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  E0E15_RS11490 thiD 2203669..2204499 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  E0E15_RS11495 tenA 2204492..2205181 (-) 690 WP_000396077.1 thiaminase II -
  E0E15_RS11500 sceD 2205567..2206262 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  E0E15_RS11505 ssb 2206651..2207046 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  E0E15_RS11510 - 2207240..2207680 (+) 441 WP_000846746.1 YwpF-like family protein -
  E0E15_RS11515 fabZ 2207739..2208179 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  E0E15_RS11520 murA 2208213..2209478 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  E0E15_RS11525 - 2209589..2209822 (-) 234 WP_000384523.1 DUF1146 family protein -
  E0E15_RS11530 - 2209954..2210046 (-) 93 WP_001790611.1 hypothetical protein -
  E0E15_RS11535 - 2210384..2210788 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1115849 E0E15_RS11505 WP_000932694.1 2206651..2207046(-) (ssb) [Staphylococcus aureus strain BPH2019 isolate BPH2019]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1115849 E0E15_RS11505 WP_000932694.1 2206651..2207046(-) (ssb) [Staphylococcus aureus strain BPH2019 isolate BPH2019]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment