Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   E0E15_RS02900 Genome accession   NZ_LR027870
Coordinates   581751..582320 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2019 isolate BPH2019     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 576751..587320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E15_RS02875 cysE 577964..578611 (+) 648 WP_001838365.1 serine O-acetyltransferase -
  E0E15_RS02880 cysS 578595..579995 (+) 1401 WP_000631964.1 cysteine--tRNA ligase -
  E0E15_RS02885 - 579988..580392 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  E0E15_RS02890 rlmB 580400..581146 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E0E15_RS02895 - 581146..581670 (+) 525 WP_000664738.1 NYN domain-containing protein -
  E0E15_RS02900 sigH 581751..582320 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  E0E15_RS02905 rpmG 582435..582578 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  E0E15_RS02910 secE 582634..582816 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  E0E15_RS02915 nusG 582829..583377 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  E0E15_RS02920 rplK 583558..583980 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  E0E15_RS02925 rplA 584188..584880 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  E0E15_RS02935 rplJ 585152..585652 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  E0E15_RS02940 rplL 585695..586063 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  E0E15_RS02945 - 586238..586846 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=1115818 E0E15_RS02900 WP_000872873.1 581751..582320(+) (sigH) [Staphylococcus aureus strain BPH2019 isolate BPH2019]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1115818 E0E15_RS02900 WP_000872873.1 581751..582320(+) (sigH) [Staphylococcus aureus strain BPH2019 isolate BPH2019]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment