Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   E0E15_RS00320 Genome accession   NZ_LR027870
Coordinates   64062..65408 (-) Length   448 a.a.
NCBI ID   WP_000816499.1    Uniprot ID   Q9R3W9
Organism   Staphylococcus aureus strain BPH2019 isolate BPH2019     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 44250..65408 64062..65408 within 0


Gene organization within MGE regions


Location: 44250..65408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E15_RS00210 mecA 44250..46259 (-) 2010 WP_001801873.1 PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -
  E0E15_RS00215 mecR1 46356..48113 (+) 1758 WP_000952923.1 beta-lactam sensor/signal transducer MecR1 -
  E0E15_RS00220 - 48113..48424 (+) 312 WP_116100490.1 BlaI/MecI/CopY family transcriptional regulator -
  E0E15_RS00225 psm-mec 48569..48637 (-) 69 WP_014532405.1 phenol-soluble modulin PSM-mec -
  E0E15_RS00230 - 48971..50101 (+) 1131 WP_010922808.1 ROK family transcriptional regulator -
  E0E15_RS00235 cstB 50215..51549 (-) 1335 Protein_40 persulfide dioxygenase-sulfurtransferase CstB -
  E0E15_RS00240 - 51582..52646 (-) 1065 WP_000438836.1 DsrE/DsrF/DrsH-like family protein -
  E0E15_RS00245 cstR 52782..53042 (+) 261 WP_000220507.1 persulfide-sensing transcriptional repressor CstR -
  E0E15_RS00250 - 53042..53680 (+) 639 Protein_43 sulfite exporter TauE/SafE family protein -
  E0E15_RS00260 - 53954..54570 (-) 617 Protein_44 CadD family cadmium resistance transporter -
  E0E15_RS00265 - 54651..57065 (-) 2415 WP_116100491.1 cadmium-translocating P-type ATPase CadA -
  E0E15_RS00270 - 57058..57423 (-) 366 WP_000159127.1 ArsR/SmtB family transcription factor -
  E0E15_RS00275 - 57661..58038 (-) 378 WP_001041908.1 DUF6262 family protein -
  E0E15_RS00280 - 58045..59937 (-) 1893 WP_002485298.1 site-specific integrase -
  E0E15_RS00285 - 60132..60455 (-) 324 WP_000088091.1 JAB domain-containing protein -
  E0E15_RS00290 - 60448..60654 (-) 207 WP_001077283.1 hypothetical protein -
  E0E15_RS00295 - 60656..61177 (-) 522 WP_000836008.1 DUF1643 domain-containing protein -
  E0E15_RS00300 - 61196..61507 (-) 312 WP_000833212.1 DUF960 family protein -
  E0E15_RS00310 - 61592..61942 (-) 351 WP_000171449.1 SAUGI family uracil-DNA glycosylase inhibitor -
  E0E15_RS00315 ccrB 62413..64041 (-) 1629 WP_001186596.1 cassette chromosome recombinase CcrB Machinery gene
  E0E15_RS00320 ccrA 64062..65408 (-) 1347 WP_000816499.1 cassette chromosome recombinase CcrA Machinery gene

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 52138.19 Da        Isoelectric Point: 10.1760

>NTDB_id=1115814 E0E15_RS00320 WP_000816499.1 64062..65408(-) (ccrA) [Staphylococcus aureus strain BPH2019 isolate BPH2019]
MKRAIGYLRQSTTKQQSLPAQKQAIELLAPKHNIQNIQYISDKQSGRTDNRTGYQQVTERIQQRQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFMSLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYQ
NGTFIINNDESPTVKAVFNYYLQGYGYKKIAQYLEDDNKLITRKPYQVRNIIMNPNYCGRVINQYGQYNNMVPPIVSATK
YEHAQAIRNKKQLHCIPSENQLKQKIKCPCCDSTLTNMTIRKKHTLRYYICPKNMNESRFVCSFKGINAQKLEVQVLATC
QNFFQNQQLYSKINNAIHQRLKKQRVIEAKSTLTQEQLIDKLAKGMIDAESFRKQTHLMNQKHKTISSISDNQLQTSLQK
VIQKSFTLNMLHPYIDEIRITKNKALVGIYFKNEPLNIVNQTSQSSIA

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=1115814 E0E15_RS00320 WP_000816499.1 64062..65408(-) (ccrA) [Staphylococcus aureus strain BPH2019 isolate BPH2019]
ATGAAACGAGCCATTGGTTATTTGCGCCAAAGTACAACGAAACAACAATCACTCCCAGCTCAAAAGCAAGCAATAGAATT
ATTAGCTCCAAAGCACAATATTCAAAATATCCAATACATTAGTGATAAGCAATCAGGCAGAACAGATAATCGAACAGGCT
ATCAACAAGTCACCGAACGCATCCAACAAAGACAATGTGACGTATTATGTTGTTATCGCTTGAATCGACTTCATCGCAAC
TTGAAAAATGCATTAAAACTCATGAAACTCTGTCAAAAATATCATGTTCATATTCTAAGTGTTCATGATGGCTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAACTCAATATATTCATGAGTCTGGCTGAACTTGAATCCGATAATATTGGAGAAC
AAGTCAAAAATGGACTTAGAGAAAAGGCAAAACAAGGTAAACTCATAACGACCCATGCGCCTTTCGGTTATCACTATCAA
AATGGTACTTTCATCATTAATAATGATGAATCACCTACCGTCAAAGCTGTATTCAATTATTATCTTCAAGGATATGGCTA
CAAGAAGATTGCACAATATTTAGAAGACGATAATAAACTTATTACCCGCAAGCCTTATCAGGTACGAAATATAATTATGA
ACCCAAATTATTGTGGTCGTGTCATCAATCAATATGGTCAATATAACAATATGGTACCACCTATTGTTTCGGCAACGAAA
TATGAACATGCTCAAGCAATCCGTAATAAGAAGCAACTTCACTGTATACCTTCAGAGAATCAGCTGAAACAAAAGATCAA
ATGTCCTTGTTGTGACTCAACACTGACAAATATGACAATAAGAAAAAAACATACATTGCGATATTATATTTGTCCTAAAA
ATATGAATGAATCTCGCTTTGTCTGTTCATTCAAAGGAATAAATGCACAAAAATTAGAAGTTCAAGTCTTAGCTACATGT
CAGAACTTCTTTCAAAACCAACAGCTCTATTCAAAAATTAATAATGCAATTCATCAACGCCTCAAAAAACAAAGAGTGAT
AGAAGCTAAAAGTACGCTAACTCAAGAACAACTGATAGATAAACTTGCCAAAGGTATGATTGATGCTGAATCATTCAGAA
AACAGACTCATTTGATGAATCAAAAGCACAAAACCATATCCTCCATAAGTGATAATCAGTTACAAACATCACTACAAAAG
GTTATACAGAAAAGTTTCACGTTAAACATGCTGCATCCCTATATTGATGAAATTCGCATTACAAAAAATAAAGCCCTTGT
TGGGATCTATTTCAAAAATGAACCATTGAACATTGTGAACCAAACCTCGCAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(168-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-321)

Resolvase, N terminal domain (Resolvase)

(4-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9R3W9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

78.174

100

0.783
  ccrA Staphylococcus aureus N315

72.383

100

0.725

Multiple sequence alignment