Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E0E09_RS11965 Genome accession   NZ_LR027869
Coordinates   2260953..2261348 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate BPH2869     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2255953..2266348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E09_RS11940 thiE 2256553..2257194 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  E0E09_RS11945 thiM 2257196..2257987 (-) 792 WP_130826625.1 hydroxyethylthiazole kinase -
  E0E09_RS11950 thiD 2257971..2258801 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  E0E09_RS11955 tenA 2258794..2259483 (-) 690 WP_000396077.1 thiaminase II -
  E0E09_RS11960 sceD 2259869..2260564 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  E0E09_RS11965 ssb 2260953..2261348 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  E0E09_RS11970 - 2261542..2261982 (+) 441 WP_000846746.1 YwpF-like family protein -
  E0E09_RS11975 fabZ 2262041..2262481 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  E0E09_RS11980 murA 2262515..2263780 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  E0E09_RS11985 - 2263891..2264124 (-) 234 WP_000384523.1 DUF1146 family protein -
  E0E09_RS11990 - 2264256..2264348 (-) 93 WP_001790611.1 hypothetical protein -
  E0E09_RS11995 - 2264686..2265090 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1115805 E0E09_RS11965 WP_000932694.1 2260953..2261348(-) (ssb) [Staphylococcus aureus isolate BPH2869]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1115805 E0E09_RS11965 WP_000932694.1 2260953..2261348(-) (ssb) [Staphylococcus aureus isolate BPH2869]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment