Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   TTHNP4_RS09545 Genome accession   NZ_LR027517
Coordinates   1712108..1714141 (-) Length   677 a.a.
NCBI ID   WP_124105238.1    Uniprot ID   -
Organism   Thermus thermophilus isolate TTHNAR1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1707108..1719141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTHNP4_RS09525 (TTHN1_01919) mnmG 1708042..1709835 (+) 1794 WP_124105234.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  TTHNP4_RS09530 (TTHN1_01920) rsmG 1709835..1710584 (+) 750 WP_124105235.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  TTHNP4_RS09535 (TTHN1_01921) soj 1710578..1711327 (+) 750 WP_124105236.1 chromosome-partitioning ATPase Soj -
  TTHNP4_RS09540 (TTHN1_01922) - 1711311..1712120 (+) 810 WP_124105237.1 ParB/RepB/Spo0J family partition protein -
  TTHNP4_RS09545 (TTHN1_01923) comA/comEC 1712108..1714141 (-) 2034 WP_124105238.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  TTHNP4_RS09550 (TTHN1_01924) comEA 1714138..1714446 (-) 309 WP_041444468.1 helix-hairpin-helix domain-containing protein Machinery gene
  TTHNP4_RS14735 (TTHN1_01925) - 1714419..1714580 (-) 162 WP_252973357.1 hypothetical protein -
  TTHNP4_RS09555 (TTHN1_01926) - 1714565..1715044 (-) 480 WP_252973358.1 YcxB family protein -
  TTHNP4_RS09560 (TTHN1_01927) - 1715077..1715604 (+) 528 WP_011173971.1 inorganic diphosphatase -
  TTHNP4_RS09565 (TTHN1_01928) - 1715668..1716162 (+) 495 WP_124105239.1 TFIIB-type zinc ribbon-containing protein -
  TTHNP4_RS09570 (TTHN1_01929) rsmI 1716164..1716958 (+) 795 WP_124105240.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  TTHNP4_RS09575 (TTHN1_01930) pfkA 1716955..1717923 (+) 969 WP_124105241.1 6-phosphofructokinase -
  TTHNP4_RS09580 (TTHN1_01931) - 1717900..1718364 (-) 465 WP_011229049.1 hypothetical protein -

Sequence

Protein


Download         Length: 677 a.a.        Molecular weight: 72052.35 Da        Isoelectric Point: 10.5745

>NTDB_id=1115731 TTHNP4_RS09545 WP_124105238.1 1712108..1714141(-) (comA/comEC) [Thermus thermophilus isolate TTHNAR1]
MRPSWTWGVGLGMGALVAAWGLFAPWAFLGLGLLPFLRLPFALGFGLVLARALLFPLPEPPWGAAVEGVFAVRGGFTRAE
GHLLWVSHYPPLPDGRYRLRGRIAPPQGRTNPGGFDQRAWLLSRGAKGVLRAESAEPLGPLPDWREGFRERLGAGLSLEA
REVVEGLVLGDKGGLETAYPLFQRAGLAHLLALSGLHVGVLVGFAVLGLYPLGRWRYLLALALLPFYLLLAGPSPSLVRA
SLMGGLSLLGLFLGLGGAGVVQALGLALFLQLLLRPEALLGLGFQLSYLAVLGLALVLPALRLPPGPRGYLLGGVAASLA
VQAFLLPLLLHRFGFAPLLAPLANLLALPLVALLVPLGFLKLFLGALPAPLVEPLARGLLLLAGLAAQGPLLRWGEIAPV
GFALYYLGLLPLLFALHRRLPWRRALLLATLPALASLLAARPKPLDLWMLDVGQGDALLARMGGGEVLVDGGRAEKGEAV
VRALRALGVEALELLVATHPDADHYGGLFRVIEEVPVGLALLAPGFPEEHPLAQALGARGVPVVRAGAGTRLRVGRGEVR
VLWPEALSGDDNRDGLALLLDFGRGRALLLADLPQEVEARLPVGEVEALKVSHHGSKSGTSEALLERTRPRVVLIGVGKN
PFGHPHPEVLERLKRHGVEVRRTDRDGAVRVFFGYVW

Nucleotide


Download         Length: 2034 bp        

>NTDB_id=1115731 TTHNP4_RS09545 WP_124105238.1 1712108..1714141(-) (comA/comEC) [Thermus thermophilus isolate TTHNAR1]
ATGAGGCCTTCTTGGACCTGGGGAGTGGGGCTTGGGATGGGGGCTTTGGTGGCCGCCTGGGGGCTTTTCGCGCCTTGGGC
CTTCCTTGGGCTCGGCCTCCTTCCCTTCCTCCGCCTTCCCTTCGCCCTGGGCTTCGGCCTCGTCCTGGCCCGGGCCCTCC
TCTTCCCCTTGCCCGAGCCCCCGTGGGGCGCCGCCGTGGAGGGGGTCTTCGCCGTGAGGGGCGGGTTCACACGGGCGGAG
GGCCACCTCCTCTGGGTGAGCCACTATCCCCCTCTACCGGACGGCCGCTACCGCCTCCGGGGGCGCATCGCCCCGCCCCA
AGGCCGGACCAACCCCGGGGGGTTTGACCAACGGGCCTGGCTCCTGAGCCGGGGGGCCAAGGGGGTGCTCCGGGCCGAAA
GCGCCGAGCCATTGGGGCCCCTGCCCGACTGGAGGGAGGGGTTCCGGGAACGCCTAGGGGCGGGCCTGAGCCTCGAGGCC
CGGGAGGTGGTGGAGGGCCTGGTCCTCGGGGACAAGGGGGGCTTAGAGACGGCCTACCCCCTCTTCCAGCGGGCGGGCCT
CGCCCACCTCCTGGCGCTCTCTGGCCTTCACGTGGGGGTGCTCGTGGGCTTCGCCGTCCTCGGCCTCTACCCCCTGGGGC
GGTGGCGCTACCTCCTGGCCCTCGCCCTCCTCCCCTTCTACCTCCTCCTCGCCGGGCCGAGCCCCTCCCTGGTGCGGGCG
AGCCTCATGGGGGGCCTGTCCCTCCTCGGCCTCTTCCTGGGCCTTGGGGGGGCCGGGGTGGTCCAGGCCCTGGGGCTCGC
CCTCTTCCTCCAGCTCCTCCTCCGCCCCGAGGCCCTCCTCGGCCTCGGGTTCCAGCTCTCCTACCTCGCGGTGCTAGGCC
TGGCCCTGGTCCTCCCGGCCCTGAGGCTTCCCCCGGGCCCCAGGGGCTATCTCCTCGGGGGCGTGGCCGCAAGCCTGGCC
GTCCAGGCCTTCCTCCTCCCCCTCCTCCTCCACCGCTTCGGCTTCGCCCCTCTCCTCGCCCCCCTCGCCAACCTCCTCGC
CCTCCCCCTGGTGGCCCTCCTCGTTCCCCTCGGCTTCCTCAAGCTCTTCCTCGGCGCCCTCCCCGCCCCCCTGGTGGAGC
CCCTCGCCCGGGGGCTCCTCCTCCTGGCAGGGCTTGCGGCCCAAGGGCCCCTCCTCCGCTGGGGGGAGATCGCCCCCGTG
GGCTTTGCCCTCTACTACCTGGGCCTTCTCCCCCTCCTTTTCGCCCTCCACCGCAGGCTTCCCTGGCGGCGCGCCCTCCT
CCTCGCCACGCTTCCCGCCCTGGCGAGCCTCCTCGCCGCCCGGCCCAAGCCCCTGGACCTCTGGATGCTGGACGTGGGCC
AGGGGGACGCCCTCCTCGCCCGCATGGGGGGCGGGGAGGTCCTGGTGGACGGGGGACGGGCGGAGAAGGGGGAGGCGGTG
GTCCGGGCCCTCCGCGCCCTCGGGGTGGAGGCCCTGGAGCTTTTGGTGGCCACCCACCCCGACGCGGACCACTACGGGGG
GCTTTTCCGGGTGATAGAGGAGGTTCCCGTGGGCCTCGCCCTCCTCGCCCCCGGCTTCCCCGAGGAACACCCCCTGGCCC
AGGCCCTAGGGGCCCGGGGCGTCCCCGTGGTCCGGGCCGGGGCGGGAACCCGCCTTAGGGTGGGCCGGGGCGAGGTCCGG
GTGCTCTGGCCCGAGGCCCTCTCCGGGGACGACAACCGAGACGGCCTCGCCCTCCTCCTGGACTTCGGCCGGGGACGGGC
CCTCCTCCTCGCCGACCTGCCCCAGGAGGTGGAGGCCAGGCTTCCCGTGGGAGAGGTGGAGGCGCTCAAGGTGAGCCACC
ACGGTTCCAAAAGCGGCACCTCCGAGGCCCTGCTGGAAAGGACCCGGCCCCGGGTGGTCCTCATCGGGGTGGGGAAAAAC
CCCTTCGGCCACCCCCACCCCGAGGTCCTGGAGCGCCTTAAGCGCCACGGCGTGGAGGTGCGCCGCACCGACCGGGACGG
GGCGGTGCGCGTCTTCTTCGGCTACGTCTGGTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(451-631)

Domain of unknown function (DUF4131) (DUF4131)

(93-136)

Competence protein (Competence)

(167-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Thermus thermophilus HB27

96.307

100

0.963
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.85

90.399

0.369

Multiple sequence alignment