Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   BAMMD1_RS01795 Genome accession   NZ_LN999829
Coordinates   368821..368940 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain B25     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 363821..373940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMMD1_RS01780 (BAMMD1_0349) - 365433..366116 (+) 684 WP_003156341.1 response regulator transcription factor -
  BAMMD1_RS01785 (BAMMD1_0350) - 366103..367536 (+) 1434 WP_161620115.1 sensor histidine kinase -
  BAMMD1_RS01790 (BAMMD1_0351) rapC 367689..368837 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  BAMMD1_RS01795 (BAMMD1_0352) phrC 368821..368940 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BAMMD1_RS18540 - 369092..369202 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  BAMMD1_RS01800 (BAMMD1_0354) - 369282..370646 (-) 1365 WP_014304341.1 aspartate kinase -
  BAMMD1_RS01805 (BAMMD1_0356) ceuB 371061..372014 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  BAMMD1_RS01810 (BAMMD1_0357) - 372004..372951 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  BAMMD1_RS01815 (BAMMD1_0358) - 372945..373703 (+) 759 WP_015388706.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=1115395 BAMMD1_RS01795 WP_003156334.1 368821..368940(+) (phrC) [Bacillus velezensis strain B25]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1115395 BAMMD1_RS01795 WP_003156334.1 368821..368940(+) (phrC) [Bacillus velezensis strain B25]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718

Multiple sequence alignment