Detailed information NTG1115394

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BAMMD1_RS01790
• Genome accession: NZ_LN999829
• Coordinates: 367689..368837 (+)
• Length: 382 a.a.
• NCBI ID: WP_014304340.1
• Uniprot ID: I2C1C2
• Organism: Bacillus velezensis strain B25
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 362689..373837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMMD1_RS01770 (BAMMD1_0347)	-	363086..363769 (-)	684	WP_060386755.1	ABC transporter ATP-binding protein	-
BAMMD1_RS01775 (BAMMD1_0348)	-	363784..365220 (-)	1437	WP_060386756.1	ABC transporter permease	-
BAMMD1_RS01780 (BAMMD1_0349)	-	365433..366116 (+)	684	WP_003156341.1	response regulator transcription factor	-
BAMMD1_RS01785 (BAMMD1_0350)	-	366103..367536 (+)	1434	WP_161620115.1	sensor histidine kinase	-
BAMMD1_RS01790 (BAMMD1_0351)	rapC	367689..368837 (+)	1149	WP_014304340.1	Rap family tetratricopeptide repeat protein	Regulator
BAMMD1_RS01795 (BAMMD1_0352)	phrC	368821..368940 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
BAMMD1_RS18540	-	369092..369202 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
BAMMD1_RS01800 (BAMMD1_0354)	-	369282..370646 (-)	1365	WP_014304341.1	aspartate kinase	-
BAMMD1_RS01805 (BAMMD1_0356)	ceuB	371061..372014 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
BAMMD1_RS01810 (BAMMD1_0357)	-	372004..372951 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
BAMMD1_RS01815 (BAMMD1_0358)	-	372945..373703 (+)	759	WP_015388706.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45494.75 Da
• Isoelectric Point: 4.9939

>NTDB_id=1115394 BAMMD1_RS01790 WP_014304340.1 367689..368837(+) (rapC) [Bacillus velezensis strain B25]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=1115394 BAMMD1_RS01790 WP_014304340.1 367689..368837(+) (rapC) [Bacillus velezensis strain B25]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCAGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTTTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

3D structure

• AlphaFold DB: I2C1C2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568