Detailed information NTG1115375

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABR2091_RS19340
• Genome accession: NZ_LN997846
• Coordinates: 345295..346155 (-)
• Length: 286 a.a.
• NCBI ID: WP_031966875.1
• Uniprot ID: A0A505MH08
• Organism: Acinetobacter baumannii isolate R2091
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 340295..351155

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABR2091_RS01595 (ABR2091_0324)	-	341186..342496 (+)	1311	WP_000753285.1	tetratricopeptide repeat protein	-
ABR2091_RS01600 (ABR2091_0325)	-	342573..342899 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
ABR2091_RS01605 (ABR2091_0326)	rlmB	343001..343750 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABR2091_RS01610 (ABR2091_0327)	-	343786..344700 (+)	915	WP_000075020.1	DMT family transporter	-
ABR2091_RS01615 (ABR2091_0328)	coaE	344697..345293 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
ABR2091_RS19340 (ABR2091_0329)	pilD	345295..346155 (-)	861	WP_031966875.1	A24 family peptidase	Machinery gene
ABR2091_RS01625 (ABR2091_0330)	pilC	346155..347381 (-)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
ABR2091_RS01630 (ABR2091_0331)	pilB	347411..349123 (-)	1713	WP_031966873.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABR2091_RS01635 (ABR2091_0332)	tpiA	349414..350208 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
ABR2091_RS01640 (ABR2091_0333)	secG	350221..350550 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32060.45 Da
• Isoelectric Point: 7.1041

>NTDB_id=1115375 ABR2091_RS19340 WP_031966875.1 345295..346155(-) (pilD) [Acinetobacter baumannii isolate R2091]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1115375 ABR2091_RS19340 WP_031966875.1 345295..346155(-) (pilD) [Acinetobacter baumannii isolate R2091]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

3D structure

• AlphaFold DB: A0A505MH08

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437