Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ABR2091_RS16725 Genome accession   NZ_LN997846
Coordinates   3580169..3580642 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii isolate R2091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3575169..3585642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR2091_RS16710 (ABR2091_3367) pilX 3577798..3578616 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABR2091_RS16715 (ABR2091_3368) pilW 3578613..3579614 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABR2091_RS16720 (ABR2091_3369) pilV 3579615..3580175 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABR2091_RS16725 (ABR2091_3370) fimU 3580169..3580642 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABR2091_RS16730 (ABR2091_3371) ispH 3580812..3581762 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABR2091_RS16735 (ABR2091_3372) gmk 3581885..3582514 (+) 630 WP_000015937.1 guanylate kinase -
  ABR2091_RS16740 (ABR2091_3373) rpoZ 3582587..3582865 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABR2091_RS19000 - 3582904..3583034 (+) 131 Protein_3305 hypothetical protein -
  ABR2091_RS16745 (ABR2091_3374) - 3583074..3585179 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=1115367 ABR2091_RS16725 WP_001214065.1 3580169..3580642(-) (fimU) [Acinetobacter baumannii isolate R2091]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1115367 ABR2091_RS16725 WP_001214065.1 3580169..3580642(-) (fimU) [Acinetobacter baumannii isolate R2091]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment