Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABR2091_RS16710 Genome accession   NZ_LN997846
Coordinates   3577798..3578616 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii isolate R2091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3572798..3583616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR2091_RS16695 (ABR2091_3364) pilE 3573015..3573440 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  ABR2091_RS16700 (ABR2091_3365) pilY2 3573437..3573919 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  ABR2091_RS16705 (ABR2091_3366) pilY1 3573932..3577786 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  ABR2091_RS16710 (ABR2091_3367) pilX 3577798..3578616 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABR2091_RS16715 (ABR2091_3368) pilW 3578613..3579614 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABR2091_RS16720 (ABR2091_3369) pilV 3579615..3580175 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABR2091_RS16725 (ABR2091_3370) fimU 3580169..3580642 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABR2091_RS16730 (ABR2091_3371) ispH 3580812..3581762 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABR2091_RS16735 (ABR2091_3372) gmk 3581885..3582514 (+) 630 WP_000015937.1 guanylate kinase -
  ABR2091_RS16740 (ABR2091_3373) rpoZ 3582587..3582865 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABR2091_RS19000 - 3582904..3583034 (+) 131 Protein_3305 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=1115364 ABR2091_RS16710 WP_000149376.1 3577798..3578616(-) (pilX) [Acinetobacter baumannii isolate R2091]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1115364 ABR2091_RS16710 WP_000149376.1 3577798..3578616(-) (pilX) [Acinetobacter baumannii isolate R2091]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment