Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | MIDG2331_RS06435 | Genome accession | NZ_LN908249 |
| Coordinates | 1425154..1425702 (-) | Length | 182 a.a. |
| NCBI ID | WP_039709242.1 | Uniprot ID | - |
| Organism | Actinobacillus pleuropneumoniae serovar 8 isolate MIDG2331 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1420154..1430702
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MIDG2331_RS06420 (MIDG2331_01312) | - | 1420648..1421169 (+) | 522 | WP_005598290.1 | SprT family zinc-dependent metalloprotease | - |
| MIDG2331_RS06425 (MIDG2331_01313) | - | 1421274..1422560 (+) | 1287 | WP_005601799.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| MIDG2331_RS06430 (MIDG2331_01314) | - | 1422752..1425079 (-) | 2328 | WP_039709241.1 | Tex family protein | - |
| MIDG2331_RS06435 (MIDG2331_01315) | pilF | 1425154..1425702 (-) | 549 | WP_039709242.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| MIDG2331_RS06440 (MIDG2331_01316) | - | 1425756..1426937 (-) | 1182 | WP_005605050.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| MIDG2331_RS06465 (MIDG2331_01321) | gltX | 1427842..1429281 (+) | 1440 | WP_005608501.1 | glutamate--tRNA ligase | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20507.11 Da Isoelectric Point: 6.3235
>NTDB_id=1115307 MIDG2331_RS06435 WP_039709242.1 1425154..1425702(-) (pilF) [Actinobacillus pleuropneumoniae serovar 8 isolate MIDG2331]
MNLAKFLRNLSACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNCPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKANEALSQLEKLDKSRAAALL
MNLAKFLRNLSACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKSSDNCPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKANEALSQLEKLDKSRAAALL
Nucleotide
Download Length: 549 bp
>NTDB_id=1115307 MIDG2331_RS06435 WP_039709242.1 1425154..1425702(-) (pilF) [Actinobacillus pleuropneumoniae serovar 8 isolate MIDG2331]
ATGAATCTTGCAAAATTTTTGCGAAATTTGAGCGCTTGTATGCTGTTATCCGTGTTGTTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATTGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGCAAATGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACTCTAG
ATGAATCTTGCAAAATTTTTGCGAAATTTGAGCGCTTGTATGCTGTTATCCGTGTTGTTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATCAAGTGATAATTGTCC
GGATGTCTTAAATAATTACGGAACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGCAAATGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACTCTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
65.426 |
100 |
0.676 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.784 |
93.956 |
0.44 |