Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LEKG_RS07615 Genome accession   NZ_LN890331
Coordinates   1576137..1577924 (-) Length   595 a.a.
NCBI ID   WP_010383008.1    Uniprot ID   A0A9Q3XUF3
Organism   Leuconostoc gasicomitatum KG16-1 isolate LEKG1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1571137..1582924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEKG_RS07585 (LEKG_1538) - 1571232..1571615 (-) 384 WP_013231838.1 VOC family protein -
  LEKG_RS07590 (LEKG_1539) - 1571678..1572412 (-) 735 WP_013231839.1 hypothetical protein -
  LEKG_RS07595 (LEKG_1540) - 1572417..1573433 (-) 1017 WP_010015354.1 zinc-dependent alcohol dehydrogenase family protein -
  LEKG_RS07600 (LEKG_1541) - 1573627..1574595 (+) 969 WP_010383002.1 LacI family DNA-binding transcriptional regulator -
  LEKG_RS07605 (LEKG_1542) - 1574665..1575582 (-) 918 WP_010383004.1 phosphoglycerate dehydrogenase -
  LEKG_RS07610 (LEKG_1543) - 1575628..1576023 (-) 396 WP_013231840.1 cytidine deaminase -
  LEKG_RS07615 (LEKG_1544) pepF 1576137..1577924 (-) 1788 WP_010383008.1 oligoendopeptidase F Regulator
  LEKG_RS07620 (LEKG_1545) - 1578021..1579049 (-) 1029 WP_013231841.1 competence protein CoiA -
  LEKG_RS07625 (LEKG_1546) - 1579099..1580532 (-) 1434 WP_013231842.1 ABC transporter substrate-binding protein/permease -
  LEKG_RS07630 (LEKG_1547) - 1580610..1581362 (-) 753 WP_041771847.1 amino acid ABC transporter ATP-binding protein -
  LEKG_RS07635 (LEKG_1548) - 1581362..1582765 (-) 1404 WP_372452426.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 67633.39 Da        Isoelectric Point: 4.4813

>NTDB_id=1115057 LEKG_RS07615 WP_010383008.1 1576137..1577924(-) (pepF) [Leuconostoc gasicomitatum KG16-1 isolate LEKG1]
MAQLLRNEVPEDLTWDLSTIFDSDNDWELAFAAVKQEAEMLSRFVGHVGDSAALLQSALEADLKIERELEKVYVYAHQIY
DQDTTNQSYAAFNSRVQALWAEVSQATAYFQPEVLNIPDDKLTAYLMTDGLQQYAHLFETLRALKPHTLDAEQEKLLAGV
GDIFNASENTFGALDNSDITFGDVHTESGETVALTNGLFSLLLESKSRDLRREAFETLYDSYIGLQNTFASTLSSHIKGH
NFLAKVRHYNSAREAAILPHNVPTTVFDTLSQTVTANLPLLHRFVSLRKRILGVTDVHSYDLYVPLVDEVDFDVTYEKAQ
EIVLAALAPLGQDYLEIVKKAFDERWIDVVENKGKRSGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSVHSYLTRH
NQDYHYGDYPIFLAEIASTTNESLLTNYLLKTNSDPKFQAYVLNQYLDGFKGTVFRQTQFAEFENWIHEQSAAGVALTAD
QMSTYYSELNQKYYGPDLFPDEEIAYEWTRIPHFYYNYYVYQYATGEAAATTLAERIIKNDGAEDYKAYLKAGSSDYPLN
VILKAGVDMSQADYLKQAFDVFETRLNQLESLLIK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=1115057 LEKG_RS07615 WP_010383008.1 1576137..1577924(-) (pepF) [Leuconostoc gasicomitatum KG16-1 isolate LEKG1]
ATGGCACAACTATTACGCAATGAAGTACCTGAAGATCTTACGTGGGATCTGTCTACAATTTTTGATTCTGATAATGATTG
GGAACTCGCTTTTGCTGCTGTTAAACAGGAAGCGGAAATGTTGAGTCGTTTTGTTGGACATGTTGGCGATTCAGCTGCAT
TGTTACAGTCTGCTTTAGAGGCAGATTTGAAAATAGAACGGGAATTGGAAAAAGTGTATGTATATGCACATCAAATTTAT
GATCAAGACACAACAAATCAGTCGTATGCGGCTTTCAATTCACGCGTACAAGCACTTTGGGCTGAAGTAAGTCAAGCAAC
AGCCTATTTTCAACCAGAAGTTTTAAACATACCAGATGATAAATTGACAGCTTACTTAATGACTGATGGTTTACAACAGT
ATGCACATTTATTTGAAACATTGCGTGCTTTAAAGCCACACACGTTAGATGCGGAACAAGAAAAATTATTAGCTGGTGTA
GGTGATATTTTTAATGCATCAGAGAACACATTTGGTGCGCTTGATAATTCAGATATAACTTTTGGGGATGTACATACGGA
ATCTGGTGAGACTGTAGCCTTGACCAATGGGCTATTTAGTTTGTTACTGGAATCAAAGTCACGAGATTTACGCCGTGAAG
CATTTGAAACATTATATGACAGTTACATCGGTTTGCAAAACACATTTGCTTCAACTTTATCATCTCACATTAAAGGACAT
AACTTTTTAGCTAAAGTGCGACATTATAATTCAGCGCGCGAAGCAGCTATCTTGCCACACAACGTCCCAACGACTGTTTT
TGATACGCTAAGTCAGACGGTAACGGCTAATTTACCATTGTTACATCGCTTTGTATCATTGCGTAAAAGAATTTTAGGCG
TAACAGATGTGCATAGTTATGATTTGTATGTGCCATTGGTGGATGAAGTTGATTTTGATGTTACATATGAAAAGGCACAA
GAAATTGTGTTAGCTGCGTTAGCACCATTAGGTCAAGATTATCTTGAAATTGTCAAAAAAGCATTTGACGAACGCTGGAT
TGATGTTGTTGAAAACAAAGGGAAACGTTCAGGAGCATATTCGAGTGGTACTTATGATACAAATCCTTTTATTTTGTTAA
ACTGGCAAAATAATTTGAACAATGTTTATACATTGGCTCATGAAATGGGTCATTCTGTTCATTCTTATTTAACACGACAT
AATCAGGACTATCATTATGGTGACTATCCAATTTTCTTAGCAGAAATTGCTTCGACAACTAATGAAAGTTTACTAACAAA
TTATTTACTAAAAACAAATAGTGATCCTAAATTCCAAGCGTATGTTTTGAATCAATATCTTGATGGTTTTAAAGGGACTG
TCTTTCGTCAGACGCAGTTTGCGGAATTTGAAAATTGGATTCATGAGCAAAGTGCAGCGGGTGTCGCTTTGACTGCTGAC
CAAATGAGCACATATTATAGTGAACTTAACCAAAAATATTATGGACCAGATTTGTTTCCAGATGAAGAAATTGCATATGA
ATGGACACGAATACCACATTTTTATTATAATTACTATGTTTACCAATACGCAACAGGTGAAGCGGCAGCAACCACATTAG
CAGAACGTATCATTAAAAATGATGGCGCAGAAGATTATAAGGCATACTTAAAAGCTGGTTCATCGGACTATCCGTTGAAT
GTGATTTTGAAAGCTGGCGTGGATATGAGTCAAGCAGATTATTTAAAGCAGGCATTCGATGTGTTTGAGACACGATTGAA
TCAATTGGAATCATTATTAATCAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(202-579)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.614

99.664

0.524

Multiple sequence alignment