Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KKKWG1_RS06915 Genome accession   NZ_LN869922
Coordinates   1355268..1356074 (-) Length   268 a.a.
NCBI ID   WP_019389016.1    Uniprot ID   -
Organism   Kingella kingae strain KWG1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1350268..1361074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKKWG1_RS06885 (KKKWG1_1404) - 1350510..1351049 (-) 540 WP_003786949.1 hypothetical protein -
  KKKWG1_RS06890 (KKKWG1_1405) - 1351058..1351309 (-) 252 WP_026036201.1 acyl carrier protein -
  KKKWG1_RS06895 (KKKWG1_1406) - 1351316..1351576 (-) 261 WP_003786945.1 phosphopantetheine-binding protein -
  KKKWG1_RS06900 (KKKWG1_1407) - 1351679..1352374 (-) 696 WP_019389019.1 alpha/beta hydrolase-fold protein -
  KKKWG1_RS06905 (KKKWG1_1408) lpdA 1352453..1354246 (-) 1794 WP_019389018.1 dihydrolipoyl dehydrogenase -
  KKKWG1_RS06910 folP 1354329..1355168 (-) 840 Protein_1406 dihydropteroate synthase -
  KKKWG1_RS06915 (KKKWG1_1411) comL 1355268..1356074 (-) 807 WP_019389016.1 outer membrane protein assembly factor BamD Machinery gene
  KKKWG1_RS06920 (KKKWG1_1412) rluD 1356075..1357190 (+) 1116 WP_060537079.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KKKWG1_RS06925 (KKKWG1_1413) rnc 1357194..1357919 (+) 726 WP_003790491.1 ribonuclease III -
  KKKWG1_RS06935 (KKKWG1_1416) - 1359080..1359283 (+) 204 WP_060537080.1 hypothetical protein -
  KKKWG1_RS06940 (KKKWG1_1417) - 1359704..1359967 (+) 264 WP_060536897.1 transposase -
  KKKWG1_RS11600 - 1359985..1360572 (+) 588 Protein_1413 transposase -
  KKKWG1_RS11605 - 1360640..1360996 (+) 357 WP_366535071.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31127.96 Da        Isoelectric Point: 7.9338

>NTDB_id=1114884 KKKWG1_RS06915 WP_019389016.1 1355268..1356074(-) (comL) [Kingella kingae strain KWG1]
MKKFLLVISVAAALSACASNTSTVSKDAQLTQNWSNDQLYSEARQELNDGNYTRATALYELLRARQADGRYTEQSLIESA
YAHFKNEEPAKALQNLARFEQNYPASVDMDYALYLKGLVLFAEDQSFLRRLASQDWSDRDPEANRRAFRVFEQLVNRYPN
SKYAEDARKRMAQLVDALGGHEIAIARYYAKRTAYLAANNRAQRILEQFQNTRYVEEALAIMIYTYEQMGNADMAEATRR
VLAQNLPNSPYLQQAWKPDEMPWWRWWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1114884 KKKWG1_RS06915 WP_019389016.1 1355268..1356074(-) (comL) [Kingella kingae strain KWG1]
ATGAAAAAATTTCTTCTTGTTATTTCGGTTGCGGCGGCTCTTTCGGCTTGTGCCAGCAACACTTCTACGGTTAGTAAAGA
CGCGCAATTAACGCAAAATTGGTCAAACGACCAACTATACAGCGAAGCGCGTCAGGAATTAAATGACGGCAATTATACAC
GCGCAACGGCGTTATATGAATTGCTACGCGCACGCCAAGCCGATGGTCGCTATACCGAGCAATCTTTGATTGAATCTGCC
TATGCCCATTTTAAAAACGAAGAACCTGCCAAAGCCTTGCAAAATTTAGCACGCTTTGAGCAAAACTACCCTGCCAGCGT
GGATATGGATTACGCGCTATATTTGAAAGGTTTGGTGTTGTTTGCCGAAGACCAATCGTTCCTACGCCGTTTGGCATCAC
AAGACTGGTCAGACCGCGACCCAGAAGCCAACCGCCGCGCATTCCGCGTATTTGAACAGCTGGTTAATCGCTATCCAAAC
AGCAAATATGCCGAAGATGCGCGTAAACGTATGGCGCAGTTGGTTGATGCTTTGGGCGGGCACGAAATCGCGATTGCGCG
TTACTATGCCAAACGCACGGCATATTTAGCCGCCAACAATCGCGCTCAACGCATTTTGGAGCAATTCCAAAACACGCGCT
ATGTGGAAGAAGCGTTGGCGATTATGATTTATACCTACGAGCAAATGGGCAATGCCGATATGGCAGAAGCCACACGCCGC
GTGTTGGCGCAAAACTTGCCCAACAGCCCATATTTGCAGCAGGCGTGGAAACCCGATGAGATGCCTTGGTGGCGTTGGTG
GAAATGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.052

99.627

0.578
  comL Neisseria gonorrhoeae MS11

57.678

99.627

0.575

Multiple sequence alignment