Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   HW42_RS18270 Genome accession   NZ_CP009104
Coordinates   3664844..3665581 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain RM9387     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3659844..3670581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW42_RS18255 (HW42_17710) clpC 3660298..3662871 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  HW42_RS18260 (HW42_17715) yfiH 3663001..3663732 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  HW42_RS18265 (HW42_17720) rluD 3663729..3664709 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HW42_RS18270 (HW42_17725) comL 3664844..3665581 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  HW42_RS18280 (HW42_17730) raiA 3665852..3666193 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  HW42_RS27930 pheL 3666297..3666344 (+) 48 WP_010723158.1 phe operon leader peptide -
  HW42_RS18285 (HW42_17735) pheA 3666443..3667603 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  HW42_RS18290 (HW42_17740) tyrA 3667646..3668767 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  HW42_RS18295 (HW42_17745) aroF 3668778..3669848 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  HW42_RS18300 (HW42_17750) yfiL 3670058..3670423 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=111485 HW42_RS18270 WP_000197686.1 3664844..3665581(+) (comL) [Escherichia coli strain RM9387]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=111485 HW42_RS18270 WP_000197686.1 3664844..3665581(+) (comL) [Escherichia coli strain RM9387]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment