Detailed information NTG1114848

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABR2090_RS19255
• Genome accession: NZ_LN868200
• Coordinates: 3457155..3458015 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152280.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii isolate R2090
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3452155..3463015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABR2090_RS16575 (ABR2090_3339)	secG	3452760..3453089 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
ABR2090_RS16580 (ABR2090_3340)	tpiA	3453102..3453896 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
ABR2090_RS16585 (ABR2090_3341)	pilB	3454187..3455899 (+)	1713	WP_001274986.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABR2090_RS16590 (ABR2090_3342)	pilC	3455929..3457155 (+)	1227	WP_000279215.1	type II secretion system F family protein	Machinery gene
ABR2090_RS19255 (ABR2090_3343)	pilD	3457155..3458015 (+)	861	WP_001152280.1	A24 family peptidase	Machinery gene
ABR2090_RS16600 (ABR2090_3344)	coaE	3458017..3458613 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
ABR2090_RS16605 (ABR2090_3345)	-	3458610..3459524 (-)	915	WP_000075010.1	DMT family transporter	-
ABR2090_RS16610 (ABR2090_3346)	rlmB	3459560..3460309 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABR2090_RS16615 (ABR2090_3347)	-	3460411..3460737 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
ABR2090_RS16620 (ABR2090_3348)	-	3460814..3462124 (-)	1311	WP_000753285.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32111.50 Da
• Isoelectric Point: 7.1041

>NTDB_id=1114848 ABR2090_RS19255 WP_001152280.1 3457155..3458015(+) (pilD) [Acinetobacter baumannii isolate R2090]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1114848 ABR2090_RS19255 WP_001152280.1 3457155..3458015(+) (pilD) [Acinetobacter baumannii isolate R2090]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	100	100	1
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441