Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABR2090_RS17050 Genome accession   NZ_LN868200
Coordinates   3550154..3551575 (+) Length   473 a.a.
NCBI ID   WP_000840555.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate R2090     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3545154..3556575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR2090_RS17030 (ABR2090_3431) thrC 3545411..3546550 (+) 1140 WP_000063593.1 threonine synthase -
  ABR2090_RS17035 (ABR2090_3432) pbpG 3546656..3547702 (-) 1047 WP_005140205.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABR2090_RS17040 (ABR2090_3433) - 3547915..3548550 (+) 636 WP_000633799.1 response regulator -
  ABR2090_RS17045 (ABR2090_3434) pilS 3548561..3550129 (+) 1569 WP_001160336.1 PAS domain-containing sensor histidine kinase Regulator
  ABR2090_RS17050 (ABR2090_3435) pilR 3550154..3551575 (+) 1422 WP_000840555.1 sigma-54 dependent transcriptional regulator Regulator
  ABR2090_RS17055 (ABR2090_3436) - 3551579..3552763 (-) 1185 WP_000939106.1 S41 family peptidase -
  ABR2090_RS17060 (ABR2090_3437) gpmI 3552779..3554326 (-) 1548 WP_000128749.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABR2090_RS17065 (ABR2090_3438) lptG 3554452..3555522 (-) 1071 WP_000881094.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53024.18 Da        Isoelectric Point: 6.6690

>NTDB_id=1114842 ABR2090_RS17050 WP_000840555.1 3550154..3551575(+) (pilR) [Acinetobacter baumannii isolate R2090]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGIDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVEHDATENALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMEWETPPKQLTEAAETYLLQQHFPGNVRELRNMIERAITLSEDATIDISHLHPAPLRANISNPFASAAQS
IQTTVAAPQVVKKLPSEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1114842 ABR2090_RS17050 WP_000840555.1 3550154..3551575(+) (pilR) [Acinetobacter baumannii isolate R2090]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTATTGATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGACGCATGTT
TAACCGACTTAAACCTACCCGATGGGAGCGGGATAGATTTAGTTAAACATGTCTCTCAAAATTACACTAATACTCCCATT
GCAGTTTTAACTGCCTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTAAATCGGCAAAAAGTAGAGCATGATGCTACCGAGAATG
CGTTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATCCAGCAGCTACGTATTGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACCGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCCAATTTGGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACCGAACTCATGGAAAGTGAGCTTTTTGGGCATAAAA
AAGGTAGCTTTACCGGAGCAACTCAAGATAAACAAGGCCTCATTTTATCGGCACACGGCGGTAGTCTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGTGCAGTACAGGAAAAAAAGATCCGACCCGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGACTTAGATTTATTGGTTAGACAAGGTAAATTCC
GTCAAGATTTATTCTTCCGTATTCACGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGAAGATGTCCTTTTA
CTGGCCAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACGCCACCTAAACAATTAACAGAAGCAGCCGAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGATG
CCACCATAGATATATCTCATTTACATCCTGCTCCACTAAGAGCGAATATTTCTAATCCTTTTGCTTCGGCTGCTCAAAGC
ATACAAACCACTGTGGCAGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGCCTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCACTCAATATGACTCATTGGAATCGTACTTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGCTTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

99.154

100

0.992
  pilR Pseudomonas aeruginosa PAK

50.98

97.04

0.495

Multiple sequence alignment