Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABR2090_RS02125 Genome accession   NZ_LN868200
Coordinates   445405..446040 (-) Length   211 a.a.
NCBI ID   WP_000472269.1    Uniprot ID   A0A383KXM5
Organism   Acinetobacter baumannii isolate R2090     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440405..451040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR2090_RS02090 (ABR2090_0419) mlaE 440741..441517 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ABR2090_RS02095 (ABR2090_0420) - 441517..442197 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ABR2090_RS02100 (ABR2090_0421) - 442224..442865 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  ABR2090_RS02105 (ABR2090_0422) - 442877..443164 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  ABR2090_RS02110 (ABR2090_0423) - 443234..444247 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  ABR2090_RS02115 (ABR2090_0424) - 444405..444986 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  ABR2090_RS02120 (ABR2090_0425) - 445001..445402 (+) 402 WP_000849705.1 NUDIX domain-containing protein -
  ABR2090_RS02125 (ABR2090_0426) comF 445405..446040 (-) 636 WP_000472269.1 ComF family protein Machinery gene
  ABR2090_RS02130 (ABR2090_0427) recG 446033..448078 (-) 2046 WP_000204943.1 ATP-dependent DNA helicase RecG -
  ABR2090_RS02135 (ABR2090_0428) - 448099..448914 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  ABR2090_RS02140 (ABR2090_0429) adeT2 448994..449980 (+) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24521.60 Da        Isoelectric Point: 9.5702

>NTDB_id=1114814 ABR2090_RS02125 WP_000472269.1 445405..446040(-) (comF) [Acinetobacter baumannii isolate R2090]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLGKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQENRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1114814 ABR2090_RS02125 WP_000472269.1 445405..446040(-) (comF) [Acinetobacter baumannii isolate R2090]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATACTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTTTGGGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAACCGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACCACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(160-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A383KXM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

100

100

1
  comF Acinetobacter baumannii strain A118

99.052

100

0.991

Multiple sequence alignment