Detailed information
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ABCIP7010_RS19235 | Genome accession | NZ_LN865143 |
| Coordinates | 345322..346182 (-) | Length | 286 a.a. |
| NCBI ID | WP_031966875.1 | Uniprot ID | A0A505MH08 |
| Organism | Acinetobacter baumannii isolate CIP70.10 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 340322..351182
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABCIP7010_RS01595 (ABCIP7010_0325) | - | 341213..342523 (+) | 1311 | WP_000753285.1 | tetratricopeptide repeat protein | - |
| ABCIP7010_RS01600 (ABCIP7010_0326) | - | 342600..342926 (+) | 327 | WP_000099685.1 | pyrimidine/purine nucleoside phosphorylase | - |
| ABCIP7010_RS01605 (ABCIP7010_0327) | rlmB | 343028..343777 (+) | 750 | WP_001118149.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| ABCIP7010_RS01610 (ABCIP7010_0328) | - | 343813..344727 (+) | 915 | WP_000075020.1 | DMT family transporter | - |
| ABCIP7010_RS01615 (ABCIP7010_0329) | coaE | 344724..345320 (-) | 597 | WP_000874125.1 | dephospho-CoA kinase | - |
| ABCIP7010_RS19235 (ABCIP7010_0330) | pilD | 345322..346182 (-) | 861 | WP_031966875.1 | A24 family peptidase | Machinery gene |
| ABCIP7010_RS01625 (ABCIP7010_0331) | pilC | 346182..347408 (-) | 1227 | WP_000279218.1 | type II secretion system F family protein | Machinery gene |
| ABCIP7010_RS01630 (ABCIP7010_0332) | pilB | 347438..349150 (-) | 1713 | WP_031966873.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABCIP7010_RS01635 (ABCIP7010_0333) | tpiA | 349441..350235 (+) | 795 | WP_000016939.1 | triose-phosphate isomerase | - |
| ABCIP7010_RS01640 (ABCIP7010_0334) | secG | 350248..350577 (+) | 330 | WP_000555570.1 | preprotein translocase subunit SecG | - |
Sequence
Protein
Download Length: 286 a.a. Molecular weight: 32060.45 Da Isoelectric Point: 7.1041
>NTDB_id=1114777 ABCIP7010_RS19235 WP_031966875.1 345322..346182(-) (pilD) [Acinetobacter baumannii isolate CIP70.10]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG
Nucleotide
Download Length: 861 bp
>NTDB_id=1114777 ABCIP7010_RS19235 WP_031966875.1 345322..346182(-) (pilD) [Acinetobacter baumannii isolate CIP70.10]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Acinetobacter baumannii D1279779 |
98.951 |
100 |
0.99 |
| pilD | Acinetobacter nosocomialis M2 |
98.601 |
100 |
0.986 |
| pilD | Vibrio cholerae strain A1552 |
53.676 |
95.105 |
0.51 |
| pilD | Vibrio campbellii strain DS40M4 |
52.399 |
94.755 |
0.497 |
| pilD | Neisseria gonorrhoeae MS11 |
47.348 |
92.308 |
0.437 |