Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilD   Type   Machinery gene
Locus tag   ABCIP7010_RS19235 Genome accession   NZ_LN865143
Coordinates   345322..346182 (-) Length   286 a.a.
NCBI ID   WP_031966875.1    Uniprot ID   A0A505MH08
Organism   Acinetobacter baumannii isolate CIP70.10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 340322..351182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCIP7010_RS01595 (ABCIP7010_0325) - 341213..342523 (+) 1311 WP_000753285.1 tetratricopeptide repeat protein -
  ABCIP7010_RS01600 (ABCIP7010_0326) - 342600..342926 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABCIP7010_RS01605 (ABCIP7010_0327) rlmB 343028..343777 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABCIP7010_RS01610 (ABCIP7010_0328) - 343813..344727 (+) 915 WP_000075020.1 DMT family transporter -
  ABCIP7010_RS01615 (ABCIP7010_0329) coaE 344724..345320 (-) 597 WP_000874125.1 dephospho-CoA kinase -
  ABCIP7010_RS19235 (ABCIP7010_0330) pilD 345322..346182 (-) 861 WP_031966875.1 A24 family peptidase Machinery gene
  ABCIP7010_RS01625 (ABCIP7010_0331) pilC 346182..347408 (-) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  ABCIP7010_RS01630 (ABCIP7010_0332) pilB 347438..349150 (-) 1713 WP_031966873.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABCIP7010_RS01635 (ABCIP7010_0333) tpiA 349441..350235 (+) 795 WP_000016939.1 triose-phosphate isomerase -
  ABCIP7010_RS01640 (ABCIP7010_0334) secG 350248..350577 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -

Sequence


Protein


Download         Length: 286 a.a.        Molecular weight: 32060.45 Da        Isoelectric Point: 7.1041

>NTDB_id=1114777 ABCIP7010_RS19235 WP_031966875.1 345322..346182(-) (pilD) [Acinetobacter baumannii isolate CIP70.10]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1114777 ABCIP7010_RS19235 WP_031966875.1 345322..346182(-) (pilD) [Acinetobacter baumannii isolate CIP70.10]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A505MH08

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99

  pilD Acinetobacter nosocomialis M2

98.601

100

0.986

  pilD Vibrio cholerae strain A1552

53.676

95.105

0.51

  pilD Vibrio campbellii strain DS40M4

52.399

94.755

0.497

  pilD Neisseria gonorrhoeae MS11

47.348

92.308

0.437


Multiple sequence alignment