Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABCIP7010_RS16235 Genome accession   NZ_LN865143
Coordinates   3488950..3489585 (+) Length   211 a.a.
NCBI ID   WP_002125534.1    Uniprot ID   A0A429LTT3
Organism   Acinetobacter baumannii isolate CIP70.10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3483950..3494585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCIP7010_RS16220 (ABCIP7010_3279) adeT2 3485010..3485996 (-) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -
  ABCIP7010_RS16225 (ABCIP7010_3280) - 3486076..3486891 (-) 816 WP_000547776.1 NAD-dependent epimerase/dehydratase family protein -
  ABCIP7010_RS16230 (ABCIP7010_3281) recG 3486912..3488957 (+) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  ABCIP7010_RS16235 (ABCIP7010_3282) comF 3488950..3489585 (+) 636 WP_002125534.1 ComF family protein Machinery gene
  ABCIP7010_RS16240 (ABCIP7010_3283) - 3489588..3489989 (-) 402 WP_000849701.1 NUDIX domain-containing protein -
  ABCIP7010_RS16245 (ABCIP7010_3284) - 3490004..3490585 (-) 582 WP_031966425.1 TIGR00730 family Rossman fold protein -
  ABCIP7010_RS16250 (ABCIP7010_3285) - 3490743..3491756 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  ABCIP7010_RS16255 (ABCIP7010_3286) - 3491826..3492113 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  ABCIP7010_RS16260 (ABCIP7010_3287) - 3492125..3492766 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  ABCIP7010_RS16265 (ABCIP7010_3288) - 3492793..3493473 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ABCIP7010_RS16270 (ABCIP7010_3289) mlaE 3493473..3494249 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24551.67 Da        Isoelectric Point: 9.7140

>NTDB_id=1114762 ABCIP7010_RS16235 WP_002125534.1 3488950..3489585(+) (comF) [Acinetobacter baumannii isolate CIP70.10]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLVSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1114762 ABCIP7010_RS16235 WP_002125534.1 3488950..3489585(+) (comF) [Acinetobacter baumannii isolate CIP70.10]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGAGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTGTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A429LTT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986

Multiple sequence alignment