Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SABB155_RS10715 Genome accession   NZ_LN854556
Coordinates   2132196..2132591 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BB155     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2127196..2137591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SABB155_RS10690 (SABB155_19580) thiE 2127795..2128436 (-) 642 WP_054190444.1 thiamine phosphate synthase -
  SABB155_RS10695 (SABB155_19590) thiM 2128438..2129229 (-) 792 WP_054190445.1 hydroxyethylthiazole kinase -
  SABB155_RS10700 (SABB155_19600) thiD 2129213..2130043 (-) 831 WP_054190446.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SABB155_RS10705 (SABB155_19610) tenA 2130036..2130725 (-) 690 WP_054190447.1 thiaminase II -
  SABB155_RS10710 (SABB155_19620) sceD 2131112..2131807 (-) 696 WP_054190448.1 lytic transglycosylase SceD -
  SABB155_RS10715 (SABB155_19630) ssb 2132196..2132591 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SABB155_RS10720 (SABB155_19640) - 2132785..2133225 (+) 441 WP_000846746.1 YwpF-like family protein -
  SABB155_RS10725 (SABB155_19650) fabZ 2133283..2133723 (-) 441 WP_054190450.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SABB155_RS10730 (SABB155_19660) murA 2133757..2135022 (-) 1266 WP_054190451.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SABB155_RS10735 (SABB155_19670) - 2135133..2135366 (-) 234 WP_000384523.1 DUF1146 family protein -
  SABB155_RS10745 (SABB155_19680) - 2135890..2136294 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1114678 SABB155_RS10715 WP_000932694.1 2132196..2132591(-) (ssb) [Staphylococcus aureus strain BB155]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1114678 SABB155_RS10715 WP_000932694.1 2132196..2132591(-) (ssb) [Staphylococcus aureus strain BB155]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTCGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment