Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   SABB155_RS07960 Genome accession   NZ_LN854556
Coordinates   1622473..1624674 (-) Length   733 a.a.
NCBI ID   WP_061745609.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BB155     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1617473..1629674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SABB155_RS07945 (SABB155_14840) lepA 1618977..1620800 (-) 1824 WP_000368338.1 translation elongation factor 4 -
  SABB155_RS07950 (SABB155_14850) rpsT 1621146..1621397 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SABB155_RS07955 (SABB155_14860) holA 1621442..1622416 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  SABB155_RS07960 (SABB155_14870) comEC 1622473..1624674 (-) 2202 WP_061745609.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SABB155_RS07965 (SABB155_14880) - 1624679..1625140 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SABB155_RS07970 (SABB155_14890) comEA 1625232..1625918 (-) 687 WP_077446658.1 ComEA family DNA-binding protein Machinery gene
  SABB155_RS07975 (SABB155_14900) - 1625958..1626674 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  SABB155_RS07980 (SABB155_14910) rsfS 1626677..1627030 (-) 354 WP_001088020.1 ribosome silencing factor -
  SABB155_RS07985 (SABB155_14920) yqeK 1627031..1627615 (-) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SABB155_RS07990 (SABB155_14930) nadD 1627605..1628174 (-) 570 WP_054190051.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SABB155_RS07995 (SABB155_14940) yhbY 1628177..1628467 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  SABB155_RS08000 (SABB155_14950) aroE 1628471..1629277 (-) 807 WP_054190052.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 84799.93 Da        Isoelectric Point: 10.0120

>NTDB_id=1114664 SABB155_RS07960 WP_061745609.1 1622473..1624674(-) (comEC) [Staphylococcus aureus strain BB155]
MLYVALSMIVGVLWNSSKVLSTFLFILLLFIAYRKNKIVYAPISLFLIIFSSWYLHYSQQAMYNYINYIERNPQFNERAQ
VIQIQRQGSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNDNKFITLKLQSIVEQSCIKSNRSNLIEK
HKQFIMNRIYDSGINFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGIT
IIILALFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQ
RLSKLQSLFIISFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFH
DWILDLFTRIKQSHFSVPKFNDWIFILFIISVYYIFWLLAKRKYILVTFCTIIILTLLITYPTNSHHKITMLNVGQGDSI
LYEGGKNQNVLIDTGGKVIDDIKHPSFSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKG
YSSKTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLL
KKYNLPEIDILKVGHHGSKTSSSKEFIEVIKPKISLISSGKNNMYHLPNIEVVKRLQGIRSRVYNSQQNGQVTIDLDDNL
KVDSNSYGNASGL

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=1114664 SABB155_RS07960 WP_061745609.1 1622473..1624674(-) (comEC) [Staphylococcus aureus strain BB155]
TTGCTGTATGTCGCGTTATCAATGATTGTAGGAGTGCTTTGGAATTCTAGCAAAGTGCTCTCTACATTTCTTTTCATTTT
ACTTTTGTTTATAGCTTATCGTAAAAATAAAATCGTTTATGCTCCTATTTCTCTCTTTTTAATCATTTTCTCCTCATGGT
ATTTACATTATTCACAACAAGCAATGTATAATTATATCAATTATATTGAACGTAATCCTCAGTTTAATGAGCGTGCTCAA
GTAATCCAAATTCAACGTCAAGGTAGTGACACATATAAAGGTAGGTTGAGTTTAAAAAATGAAATATATCCTTTCTTTTT
AACAGATAAAAAGAATTTTGATTTAAAGAAAATTGAAAGTCGTAATTGTATTGTTAAAGGACAATTCAAAGTTAATGACA
ATAAGTTTATAACTCTTAAATTACAAAGTATAGTTGAGCAAAGCTGTATAAAATCGAACCGGTCTAATTTAATTGAGAAA
CATAAACAGTTTATAATGAATCGAATTTATGATTCGGGTATTAACTTTCCAGATCGTATTATGGCATTGATTACTGGTGA
CGTAAAAGAAATTAATGAGCAATTTAAAGAACGTGTTAAAGAGATAGGTATATATCATTTGCTGGCAGTTAGTGGCTCGC
ATATAGCTGCAATTGTATTCTTAATTTACCAACCTTTAAAACGATTAAATTTACCTTTATTTGTCATTAAAGGAATTACA
ATCATTATATTAGCTTTATTTGCTCAATACACAAATTATGCACCTAGTGCTGTAAGAGCTATAATAATGACAACTCTTGT
ACTGCTTATTACTAAGCAAATTAAAATAAAGGGTATTCAGCTATTAGCATTTGCATTTATAATTATGTTTATTTTGAATC
CACTAGTTGTTTATGATATTGGATTTCAATTTTCATTCATCATTTCATTTTTTATTATGCTACTTTTTCCTTTTTTACAG
CGATTGTCAAAATTACAATCATTATTCATAATTTCGTTTATTGCACAATTAGCTTCATTTATCGTTGCCATTCCAAACTT
TCATCAACTTCAATGGGTGGGATTTTTATCTAATTTGATTTTTGTACCGTACTATTCGATTATATTGTTTCCTCTATCTA
TTTTATTCTTTATTACAAGCCATTTTATTGTGGGATTAACGCCGCTAAATTACTTGGTTGACCTAAGTTTTAATTTTCAT
GACTGGATACTGGACCTATTCACAAGAATCAAGCAATCACATTTTTCTGTTCCCAAGTTTAATGATTGGATATTTATATT
ATTTATAATTTCTGTTTATTACATATTTTGGTTATTGGCTAAACGTAAATATATATTGGTTACGTTTTGCACTATAATTA
TTCTGACATTATTAATAACGTATCCAACAAATTCACATCACAAAATTACAATGTTAAATGTGGGGCAGGGAGACAGTATT
TTATATGAAGGTGGTAAAAACCAAAACGTCTTGATTGATACAGGTGGGAAAGTGATTGATGATATTAAACACCCTAGTTT
TTCAATTTCTAAATATCATATTTTACCAACGCTAAATGAAAGAGGGATAAATGAATTAGAGTATCTAATTTTAACACATC
CACACAATGACCATATTGGTGAAGTGGAATATATTATTAGTCATATTAAAATTAAACATATTGTGATTTACAATAAGGGA
TATAGTAGTAAAACATTGATGTTATTATCGAAATTAAGCCATAAGTATAATATTAAACTTATGGATGTAAGACAAGTTAG
TAGTTTTAAACTTGGAGATAGTAGTTTTCTATTTTTTGATAGTTTTATTCCAAATAGCCGAGATAAAAATGAATATTCGA
TTATTACTATGATTACATATCAAAATAAAAAAGTTTTATTAATGGGCGATGCTAGTAAAAATAATGAATCTTTACTACTA
AAAAAATATAACTTGCCGGAGATTGATATTTTAAAAGTAGGACATCATGGGAGCAAGACAAGTAGTTCCAAAGAATTTAT
AGAGGTGATTAAGCCTAAAATAAGTTTGATTTCTTCTGGAAAGAACAATATGTATCATCTTCCTAACATAGAAGTTGTTA
AACGATTACAAGGGATTCGCAGTCGCGTTTACAATAGTCAACAAAACGGTCAAGTTACAATAGACTTGGATGATAATTTA
AAAGTTGATTCAAACTCTTATGGAAATGCAAGTGGTTTATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(474-679)

Competence protein (Competence)

(183-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

96.317

100

0.963
  comEC Staphylococcus aureus MW2

95.907

100

0.959

Multiple sequence alignment