Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SABB155_RS02320 Genome accession   NZ_LN854556
Coordinates   497496..498065 (+) Length   189 a.a.
NCBI ID   WP_054190481.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BB155     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 492496..503065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SABB155_RS02295 (SABB155_04140) cysE 493709..494356 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SABB155_RS02300 (SABB155_04150) cysS 494340..495740 (+) 1401 WP_054190482.1 cysteine--tRNA ligase -
  SABB155_RS02305 (SABB155_04160) - 495733..496137 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SABB155_RS02310 (SABB155_04170) rlmB 496145..496891 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SABB155_RS02315 (SABB155_04180) - 496891..497415 (+) 525 WP_000664738.1 NYN domain-containing protein -
  SABB155_RS02320 (SABB155_04190) sigH 497496..498065 (+) 570 WP_054190481.1 sigma-70 family RNA polymerase sigma factor Regulator
  SABB155_RS14070 (SAR0538) rpmG 498180..498323 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SABB155_RS02325 (SABB155_04200) secE 498379..498561 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SABB155_RS02330 (SABB155_04210) nusG 498574..499122 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SABB155_RS02335 (SABB155_04220) rplK 499303..499725 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SABB155_RS02340 (SABB155_04230) rplA 499933..500625 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SABB155_RS02345 (SABB155_04240) rplJ 500897..501397 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SABB155_RS02350 (SABB155_04250) rplL 501439..501807 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SABB155_RS02355 (SABB155_04260) - 501982..502590 (+) 609 WP_054190480.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23085.90 Da        Isoelectric Point: 9.6015

>NTDB_id=1114645 SABB155_RS02320 WP_054190481.1 497496..498065(+) (sigH) [Staphylococcus aureus strain BB155]
MEYDLTTQDSTTKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1114645 SABB155_RS02320 WP_054190481.1 497496..498065(+) (sigH) [Staphylococcus aureus strain BB155]
TTGGAATATGATTTGACAACTCAAGACAGTACAACCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCAAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCTATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

97.884

100

0.979
  sigH Staphylococcus aureus N315

96.825

100

0.968

Multiple sequence alignment