Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   A66_RS08850 Genome accession   NZ_LN847353
Coordinates   1684316..1685380 (-) Length   354 a.a.
NCBI ID   WP_053039757.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain A66     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1679316..1690380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A66_RS08830 (A66_01758) - 1680055..1681386 (-) 1332 WP_000390049.1 hemolysin family protein -
  A66_RS08835 (A66_01759) endA 1681677..1682501 (-) 825 WP_001036790.1 DNA-entry nuclease EndA Machinery gene
  A66_RS08840 (A66_01760) - 1682540..1682728 (-) 189 WP_001036519.1 DNA-directed RNA polymerase subunit beta -
  A66_RS08845 (A66_01761) murA 1682721..1684004 (-) 1284 WP_000358027.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  A66_RS11345 (A66_01762) - 1684028..1684258 (-) 231 WP_000250392.1 DUF1146 family protein -
  A66_RS08850 (A66_01763) sepM 1684316..1685380 (-) 1065 WP_053039757.1 SepM family pheromone-processing serine protease Regulator
  A66_RS08855 (A66_01764) coaD 1685364..1685852 (-) 489 WP_053039758.1 pantetheine-phosphate adenylyltransferase -
  A66_RS08860 (A66_01765) rsmD 1685842..1686381 (-) 540 WP_000706960.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A66_RS08865 (A66_01766) asnA 1686446..1687438 (-) 993 WP_000747993.1 aspartate--ammonia ligase -
  A66_RS08875 (A66_01767) - 1687550..1688233 (-) 684 WP_001016913.1 Bax inhibitor-1/YccA family protein -
  A66_RS08880 (A66_01768) - 1688289..1689029 (-) 741 WP_053039759.1 RNA methyltransferase -
  A66_RS08885 (A66_01769) - 1689063..1689341 (+) 279 WP_001174613.1 acylphosphatase -
  A66_RS08890 (A66_01770) yidC 1689419..1690345 (+) 927 WP_000835941.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 354 a.a.        Molecular weight: 38515.64 Da        Isoelectric Point: 5.0813

>NTDB_id=1114595 A66_RS08850 WP_053039757.1 1684316..1685380(-) (sepM) [Streptococcus pneumoniae strain A66]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKDIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIGLIDRTEVISNVPISFSTAGIGG
PSAGLMFSLAIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHPDAKNN
YQTALEAAKTIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1114595 A66_RS08850 WP_053039757.1 1684316..1685380(-) (sepM) [Streptococcus pneumoniae strain A66]
ATGAAAAAAAAGATTAGATGGCCCTTATACGTCATTGCGGCCTTGATTGTGACTTTCTTGGCATTTGTAGTGCCCTTGCC
TTATTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCCACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGATATCGAACTCAAGTACTTTGGCGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACAGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGATTACGTCAGTTCTCAAAAATTAGGGGATTC
CGTCAAGGTCACCTATGAAGAGGATGGGCAAACCAAGTCTGCAGAAGGAAAGATTATCACCTTGGAAAATGGAAAAAATG
GGATTGGAATCGGCTTGATTGATCGTACAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGT
CCAAGTGCTGGTCTCATGTTTAGTCTAGCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGC
CGGTACAGGTACCATTGACCGCGATGGTAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGG
CAGGTGCTGCTATTTTCTTTGCTCCTGATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAAC
TACCAAACAGCCCTAGAAGCGGCTAAAACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGAT
TGATTACTTGAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

58.405

99.153

0.579


Multiple sequence alignment