Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CCOS191_RS19025 Genome accession   NZ_LN847264
Coordinates   4297122..4297757 (-) Length   211 a.a.
NCBI ID   WP_046856543.1    Uniprot ID   -
Organism   Pseudomonas sp. CCOS 191     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4292122..4302757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCOS191_RS18995 (CCOS191_3775) murB 4293221..4294240 (-) 1020 WP_046856540.1 UDP-N-acetylmuramate dehydrogenase -
  CCOS191_RS19000 (CCOS191_3776) - 4294237..4294701 (-) 465 WP_046856541.1 low molecular weight protein-tyrosine-phosphatase -
  CCOS191_RS19005 (CCOS191_3777) kdsB 4294701..4295465 (-) 765 WP_038705673.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CCOS191_RS19010 (CCOS191_3778) - 4295462..4295647 (-) 186 WP_003247142.1 Trm112 family protein -
  CCOS191_RS19015 (CCOS191_3779) lpxK 4295681..4296691 (-) 1011 WP_046856542.1 tetraacyldisaccharide 4'-kinase -
  CCOS191_RS19020 (CCOS191_3780) - 4296691..4297125 (-) 435 WP_023632003.1 biopolymer transporter ExbD -
  CCOS191_RS19025 (CCOS191_3781) exbB 4297122..4297757 (-) 636 WP_046856543.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CCOS191_RS19030 (CCOS191_3782) comA 4298164..4300368 (-) 2205 WP_046856544.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CCOS191_RS27585 (CCOS191_3783) - 4300513..4301160 (+) 648 WP_156177663.1 DUF2062 domain-containing protein -
  CCOS191_RS19035 (CCOS191_3784) - 4301044..4301823 (-) 780 WP_046856545.1 ABC transporter permease -
  CCOS191_RS19040 (CCOS191_3785) - 4301820..4302752 (-) 933 WP_046856546.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22843.17 Da        Isoelectric Point: 7.3616

>NTDB_id=1114531 CCOS191_RS19025 WP_046856543.1 4297122..4297757(-) (exbB) [Pseudomonas sp. CCOS 191]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTGDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1114531 CCOS191_RS19025 WP_046856543.1 4297122..4297757(-) (exbB) [Pseudomonas sp. CCOS 191]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGTCGCCATGGCGATCGTCGT
CGAGCGCCTGTGGACCTTGCGCGCCAGCCGTGTCACCCCGCCACACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAGCTCACCGGTGACAAGCTCAAGGCGCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCATGGCCGCGAGATCATGAAAGAGTGCATCGAAGAGGCTGCCTCGCGGGTCATCCACGAGCTGGAGCGCTATAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGTTCGCAGATGACCGCCAATGCCGCGGTGCTGGCGGGCGGTATTTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAGGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCTGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment