Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | CCOS191_RS04275 | Genome accession | NZ_LN847264 |
| Coordinates | 918147..919013 (-) | Length | 288 a.a. |
| NCBI ID | WP_046854175.1 | Uniprot ID | A0A0F7Y3I2 |
| Organism | Pseudomonas sp. CCOS 191 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 913147..924013
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCOS191_RS04240 (CCOS191_0834) | - | 914495..914668 (-) | 174 | WP_023631877.1 | DUF3094 family protein | - |
| CCOS191_RS04245 (CCOS191_0835) | - | 914801..915430 (-) | 630 | WP_038706811.1 | DUF1780 domain-containing protein | - |
| CCOS191_RS04250 (CCOS191_0836) | - | 915486..915917 (-) | 432 | WP_046854170.1 | hypothetical protein | - |
| CCOS191_RS04255 (CCOS191_0837) | - | 916004..916711 (+) | 708 | WP_046854171.1 | energy-coupling factor ABC transporter permease | - |
| CCOS191_RS04260 (CCOS191_0838) | - | 916756..917004 (-) | 249 | WP_046854172.1 | hypothetical protein | - |
| CCOS191_RS04265 (CCOS191_0839) | yacG | 917327..917527 (-) | 201 | WP_046854173.1 | DNA gyrase inhibitor YacG | - |
| CCOS191_RS04270 (CCOS191_0840) | coaE | 917524..918147 (-) | 624 | WP_046854174.1 | dephospho-CoA kinase | - |
| CCOS191_RS04275 (CCOS191_0841) | pilD | 918147..919013 (-) | 867 | WP_046854175.1 | A24 family peptidase | Machinery gene |
| CCOS191_RS04280 (CCOS191_0842) | - | 919016..920224 (-) | 1209 | WP_046854176.1 | type II secretion system F family protein | - |
| CCOS191_RS04285 (CCOS191_0843) | - | 920451..920861 (+) | 411 | WP_046854177.1 | pilin | - |
| CCOS191_RS04295 (CCOS191_0844) | - | 921157..922446 (+) | 1290 | WP_046854178.1 | integrase arm-type DNA-binding domain-containing protein | - |
| CCOS191_RS26990 | - | 922719..922952 (+) | 234 | WP_082120352.1 | pyocin activator PrtN family protein | - |
| CCOS191_RS26995 | - | 923151..923459 (+) | 309 | WP_082120353.1 | AlpA family phage regulatory protein | - |
| CCOS191_RS04300 (CCOS191_0845) | - | 923456..923791 (+) | 336 | WP_046854179.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31696.92 Da Isoelectric Point: 7.2985
>NTDB_id=1114524 CCOS191_RS04275 WP_046854175.1 918147..919013(-) (pilD) [Pseudomonas sp. CCOS 191]
MNAWTVIVEHPPFFYTLAAVLGLLVGSFLNVLAYRLPIMLERQWQREAQEVLGLPQAEHERFDLCLPASRCPHCQRQIRA
WENIPLLSYLALRGRCAGCKARISLRYPLVELGSALLSLLVAWHFGPGVEALGVMLLTWGLIALSLIDAEHQLLPDVLVL
PLLWLGLIVNAFGLLVPLSDALWGAVAGYLSLWSVYWVFKLITGKEGMGFGDFKLLAMLGAWGGWQILPLTLMLASLAGA
LIGLTLVRLKRMQMGAALPFGAYLAIAGWIALLWGDEIVASYLQLLGT
MNAWTVIVEHPPFFYTLAAVLGLLVGSFLNVLAYRLPIMLERQWQREAQEVLGLPQAEHERFDLCLPASRCPHCQRQIRA
WENIPLLSYLALRGRCAGCKARISLRYPLVELGSALLSLLVAWHFGPGVEALGVMLLTWGLIALSLIDAEHQLLPDVLVL
PLLWLGLIVNAFGLLVPLSDALWGAVAGYLSLWSVYWVFKLITGKEGMGFGDFKLLAMLGAWGGWQILPLTLMLASLAGA
LIGLTLVRLKRMQMGAALPFGAYLAIAGWIALLWGDEIVASYLQLLGT
Nucleotide
Download Length: 867 bp
>NTDB_id=1114524 CCOS191_RS04275 WP_046854175.1 918147..919013(-) (pilD) [Pseudomonas sp. CCOS 191]
ATGAATGCCTGGACCGTAATCGTCGAACATCCGCCTTTCTTCTATACCTTGGCCGCGGTGCTGGGGTTGCTGGTGGGCAG
CTTTCTCAATGTGCTGGCGTACCGTCTGCCAATCATGCTCGAGCGCCAATGGCAGCGGGAGGCGCAGGAGGTGCTGGGGC
TGCCGCAGGCCGAGCACGAGCGCTTCGACCTGTGCCTGCCAGCTTCGCGTTGCCCGCACTGCCAGCGCCAGATCCGCGCC
TGGGAAAACATTCCGCTGCTGAGTTACCTGGCCCTGCGCGGGCGGTGCGCGGGGTGCAAGGCGCGAATCAGCCTGCGTTA
TCCCCTGGTGGAGCTTGGCAGCGCCCTGCTCTCGCTGTTGGTGGCCTGGCATTTCGGGCCGGGTGTCGAGGCGCTGGGGG
TGATGCTGCTGACCTGGGGGCTGATCGCCTTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGTGCTGGTGCTG
CCGCTGTTGTGGCTGGGGTTGATCGTCAACGCCTTCGGGCTGCTGGTGCCGCTGAGCGATGCGCTGTGGGGCGCGGTGGC
GGGTTACCTGAGTTTGTGGTCGGTGTACTGGGTCTTCAAGCTGATCACCGGCAAGGAGGGCATGGGCTTCGGCGACTTCA
AGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCTTGATGCTGGCGTCCTTAGCGGGGGCG
TTGATCGGGCTGACGCTTGTGCGTCTTAAGCGCATGCAAATGGGCGCGGCATTGCCTTTCGGGGCTTATCTGGCCATTGC
GGGGTGGATCGCATTGCTCTGGGGTGATGAAATAGTCGCCTCATACCTGCAACTGCTTGGAACCTGA
ATGAATGCCTGGACCGTAATCGTCGAACATCCGCCTTTCTTCTATACCTTGGCCGCGGTGCTGGGGTTGCTGGTGGGCAG
CTTTCTCAATGTGCTGGCGTACCGTCTGCCAATCATGCTCGAGCGCCAATGGCAGCGGGAGGCGCAGGAGGTGCTGGGGC
TGCCGCAGGCCGAGCACGAGCGCTTCGACCTGTGCCTGCCAGCTTCGCGTTGCCCGCACTGCCAGCGCCAGATCCGCGCC
TGGGAAAACATTCCGCTGCTGAGTTACCTGGCCCTGCGCGGGCGGTGCGCGGGGTGCAAGGCGCGAATCAGCCTGCGTTA
TCCCCTGGTGGAGCTTGGCAGCGCCCTGCTCTCGCTGTTGGTGGCCTGGCATTTCGGGCCGGGTGTCGAGGCGCTGGGGG
TGATGCTGCTGACCTGGGGGCTGATCGCCTTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGTGCTGGTGCTG
CCGCTGTTGTGGCTGGGGTTGATCGTCAACGCCTTCGGGCTGCTGGTGCCGCTGAGCGATGCGCTGTGGGGCGCGGTGGC
GGGTTACCTGAGTTTGTGGTCGGTGTACTGGGTCTTCAAGCTGATCACCGGCAAGGAGGGCATGGGCTTCGGCGACTTCA
AGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCTTGATGCTGGCGTCCTTAGCGGGGGCG
TTGATCGGGCTGACGCTTGTGCGTCTTAAGCGCATGCAAATGGGCGCGGCATTGCCTTTCGGGGCTTATCTGGCCATTGC
GGGGTGGATCGCATTGCTCTGGGGTGATGAAATAGTCGCCTCATACCTGCAACTGCTTGGAACCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.122 |
96.875 |
0.524 |
| pilD | Acinetobacter baumannii D1279779 |
51.661 |
94.097 |
0.486 |
| pilD | Neisseria gonorrhoeae MS11 |
52.045 |
93.403 |
0.486 |
| pilD | Acinetobacter nosocomialis M2 |
51.292 |
94.097 |
0.483 |
| pilD | Vibrio campbellii strain DS40M4 |
48.754 |
97.569 |
0.476 |