Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AT689_RS07800 Genome accession   NZ_LN831051
Coordinates   1455847..1456656 (+) Length   269 a.a.
NCBI ID   WP_001289496.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC7465     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1450847..1461656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT689_RS13500 - 1452346..1452471 (-) 126 WP_001818232.1 hypothetical protein -
  AT689_RS07785 (ERS445053_01526) mutY 1452568..1453743 (+) 1176 WP_000886147.1 A/G-specific adenine glycosylase -
  AT689_RS07790 (ERS445053_01527) micA 1453799..1454503 (+) 705 WP_000722076.1 response regulator YycF Regulator
  AT689_RS07795 (ERS445053_01528) micB 1454496..1455845 (+) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AT689_RS07800 (ERS445053_01529) vicX 1455847..1456656 (+) 810 WP_001289496.1 MBL fold metallo-hydrolase Regulator
  AT689_RS07805 (ERS445053_01530) relB 1456747..1456989 (+) 243 WP_012677101.1 type II toxin-antitoxin system RelB family antitoxin -
  AT689_RS07810 (ERS445053_01531) - 1456991..1457245 (+) 255 WP_001823540.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AT689_RS07815 (ERS445053_01532) - 1457292..1458035 (+) 744 WP_000725952.1 potassium channel family protein -
  AT689_RS07820 (ERS445053_01533) - 1458325..1459311 (-) 987 WP_000204727.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29902.82 Da        Isoelectric Point: 5.9895

>NTDB_id=1114403 AT689_RS07800 WP_001289496.1 1455847..1456656(+) (vicX) [Streptococcus pneumoniae strain NCTC7465]
MSEIGFKYSILASGSSGNSFYLETSKNKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1114403 AT689_RS07800 WP_001289496.1 1455847..1456656(+) (vicX) [Streptococcus pneumoniae strain NCTC7465]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
TAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAATAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.952

100

0.77

Multiple sequence alignment