Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   AT689_RS04640 Genome accession   NZ_LN831051
Coordinates   855560..856486 (+) Length   308 a.a.
NCBI ID   WP_000103698.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC7465     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 850560..861486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT689_RS04630 (ERS445053_00902) amiA3 852018..853997 (+) 1980 WP_000742229.1 peptide ABC transporter substrate-binding protein Regulator
  AT689_RS04635 (ERS445053_00903) amiC 854064..855560 (+) 1497 WP_000759902.1 ABC transporter permease Regulator
  AT689_RS04640 (ERS445053_00904) amiD 855560..856486 (+) 927 WP_000103698.1 oligopeptide ABC transporter permease OppC Regulator
  AT689_RS04645 (ERS445053_00905) amiE 856495..857562 (+) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  AT689_RS04650 (ERS445053_00906) amiF 857573..858499 (+) 927 WP_001291295.1 ATP-binding cassette domain-containing protein Regulator
  AT689_RS12470 - 859118..859894 (+) 777 Protein_864 ABC transporter substrate-binding protein -
  AT689_RS13410 - 859939..860816 (+) 878 Protein_865 ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34747.92 Da        Isoelectric Point: 9.9044

>NTDB_id=1114385 AT689_RS04640 WP_000103698.1 855560..856486(+) (amiD) [Streptococcus pneumoniae strain NCTC7465]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSIR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGARFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1114385 AT689_RS04640 WP_000103698.1 855560..856486(+) (amiD) [Streptococcus pneumoniae strain NCTC7465]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTATTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTAGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATCGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.468

100

0.825
  amiD Streptococcus thermophilus LMG 18311

80.844

100

0.808
  amiD Streptococcus thermophilus LMD-9

80.844

100

0.808

Multiple sequence alignment