Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   AT689_RS04650 Genome accession   NZ_LN831051
Coordinates   857573..858499 (+) Length   308 a.a.
NCBI ID   WP_001291295.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC7465     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 852573..863499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT689_RS04635 (ERS445053_00903) amiC 854064..855560 (+) 1497 WP_000759902.1 ABC transporter permease Regulator
  AT689_RS04640 (ERS445053_00904) amiD 855560..856486 (+) 927 WP_000103698.1 oligopeptide ABC transporter permease OppC Regulator
  AT689_RS04645 (ERS445053_00905) amiE 856495..857562 (+) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  AT689_RS04650 (ERS445053_00906) amiF 857573..858499 (+) 927 WP_001291295.1 ATP-binding cassette domain-containing protein Regulator
  AT689_RS12470 - 859118..859894 (+) 777 Protein_864 ABC transporter substrate-binding protein -
  AT689_RS13410 - 859939..860816 (+) 878 Protein_865 ABC transporter permease -
  AT689_RS04665 (ERS445053_00911) - 860829..861632 (+) 804 WP_000157659.1 ABC transporter ATP-binding protein -
  AT689_RS04670 (ERS445053_00912) treR 861665..862375 (-) 711 WP_000760673.1 trehalose operon repressor Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34824.90 Da        Isoelectric Point: 6.6224

>NTDB_id=1114387 AT689_RS04650 WP_001291295.1 857573..858499(+) (amiF) [Streptococcus pneumoniae strain NCTC7465]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIVDEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1114387 AT689_RS04650 WP_001291295.1 857573..858499(+) (amiF) [Streptococcus pneumoniae strain NCTC7465]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGTAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.246

99.026

0.844
  amiF Streptococcus salivarius strain HSISS4

85.246

99.026

0.844
  amiF Streptococcus thermophilus LMD-9

84.918

99.026

0.841

Multiple sequence alignment