Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AT694_RS08125 Genome accession   NZ_LN831036
Coordinates   1650485..1651171 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC13435     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1645485..1656171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT694_RS08105 (ERS445051_01537) rpsT 1646399..1646650 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  AT694_RS08110 (ERS445051_01538) holA 1646695..1647669 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  AT694_RS08115 (ERS445051_01539) comEC 1647726..1649927 (-) 2202 WP_024937009.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AT694_RS08120 (ERS445051_01540) - 1649932..1650393 (-) 462 WP_000439693.1 ComE operon protein 2 -
  AT694_RS08125 (ERS445051_01541) comEA 1650485..1651171 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  AT694_RS08130 (ERS445051_01542) - 1651211..1651927 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  AT694_RS08135 (ERS445051_01543) rsfS 1651930..1652283 (-) 354 WP_001088022.1 ribosome silencing factor -
  AT694_RS08140 (ERS445051_01544) yqeK 1652284..1652868 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  AT694_RS08145 (ERS445051_01545) nadD 1652858..1653427 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  AT694_RS08150 (ERS445051_01546) yhbY 1653430..1653720 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  AT694_RS08155 (ERS445051_01547) aroE 1653724..1654530 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  AT694_RS08160 (ERS445051_01548) yqeH 1654544..1655644 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=1114318 AT694_RS08125 WP_001788928.1 1650485..1651171(-) (comEA) [Staphylococcus aureus strain NCTC13435]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1114318 AT694_RS08125 WP_001788928.1 1650485..1651171(-) (comEA) [Staphylococcus aureus strain NCTC13435]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969

Multiple sequence alignment