Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   AT683_RS00280 Genome accession   NZ_LN831035
Coordinates   57399..57911 (-) Length   170 a.a.
NCBI ID   WP_005651545.1    Uniprot ID   A0A0H3PJN2
Organism   Haemophilus influenzae strain NCTC8143     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52399..62911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT683_RS00265 (ERS450003_00051) comQ 55720..56007 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  AT683_RS00270 (ERS450003_00052) comP 56000..56683 (-) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  AT683_RS00275 (ERS450003_00053) comO 56680..57399 (-) 720 WP_050845846.1 type II secretion system protein J Machinery gene
  AT683_RS00280 (ERS450003_00054) comN 57399..57911 (-) 513 WP_005651545.1 type II secretion system protein Machinery gene
  AT683_RS00285 (ERS450003_00055) suhB 58111..58914 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  AT683_RS00290 (ERS450003_00056) nrfE 59022..60929 (+) 1908 WP_050845845.1 heme lyase NrfEFG subunit NrfE -
  AT683_RS00295 (ERS450003_00057) - 60929..61459 (+) 531 WP_050845844.1 DsbE family thiol:disulfide interchange protein -
  AT683_RS00300 (ERS450003_00058) nrfF 61456..62610 (+) 1155 WP_050845843.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19877.15 Da        Isoelectric Point: 8.9743

>NTDB_id=1114263 AT683_RS00280 WP_005651545.1 57399..57911(-) (comN) [Haemophilus influenzae strain NCTC8143]
MQKGMTLVELLIGLAIISIVLNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1114263 AT683_RS00280 WP_005651545.1 57399..57911(-) (comN) [Haemophilus influenzae strain NCTC8143]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGTGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTATTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTCTACAAGCGGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3PJN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.824

100

0.988

Multiple sequence alignment