Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   AT683_RS00275 Genome accession   NZ_LN831035
Coordinates   56680..57399 (-) Length   239 a.a.
NCBI ID   WP_050845846.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8143     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51680..62399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT683_RS00255 (ERS450003_00049) nrdR 51805..52254 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  AT683_RS00260 (ERS450003_00050) recC 52309..55674 (-) 3366 WP_050845847.1 exodeoxyribonuclease V subunit gamma -
  AT683_RS00265 (ERS450003_00051) comQ 55720..56007 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  AT683_RS00270 (ERS450003_00052) comP 56000..56683 (-) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  AT683_RS00275 (ERS450003_00053) comO 56680..57399 (-) 720 WP_050845846.1 type II secretion system protein J Machinery gene
  AT683_RS00280 (ERS450003_00054) comN 57399..57911 (-) 513 WP_005651545.1 type II secretion system protein Machinery gene
  AT683_RS00285 (ERS450003_00055) suhB 58111..58914 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  AT683_RS00290 (ERS450003_00056) nrfE 59022..60929 (+) 1908 WP_050845845.1 heme lyase NrfEFG subunit NrfE -
  AT683_RS00295 (ERS450003_00057) - 60929..61459 (+) 531 WP_050845844.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26862.24 Da        Isoelectric Point: 9.5507

>NTDB_id=1114262 AT683_RS00275 WP_050845846.1 56680..57399(-) (comO) [Haemophilus influenzae strain NCTC8143]
MMKVLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQKQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1114262 AT683_RS00275 WP_050845846.1 56680..57399(-) (comO) [Haemophilus influenzae strain NCTC8143]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCGCTGATGATTTCACTAGCATTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACAGATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCACCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACCTCCCTTGTCGTTGCTCTTTGGAATCAAAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

98.739

99.582

0.983

Multiple sequence alignment