Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   AT683_RS00265 Genome accession   NZ_LN831035
Coordinates   55720..56007 (-) Length   95 a.a.
NCBI ID   WP_021034778.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8143     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50720..61007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT683_RS00255 (ERS450003_00049) nrdR 51805..52254 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  AT683_RS00260 (ERS450003_00050) recC 52309..55674 (-) 3366 WP_050845847.1 exodeoxyribonuclease V subunit gamma -
  AT683_RS00265 (ERS450003_00051) comQ 55720..56007 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  AT683_RS00270 (ERS450003_00052) comP 56000..56683 (-) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  AT683_RS00275 (ERS450003_00053) comO 56680..57399 (-) 720 WP_050845846.1 type II secretion system protein J Machinery gene
  AT683_RS00280 (ERS450003_00054) comN 57399..57911 (-) 513 WP_005651545.1 type II secretion system protein Machinery gene
  AT683_RS00285 (ERS450003_00055) suhB 58111..58914 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  AT683_RS00290 (ERS450003_00056) nrfE 59022..60929 (+) 1908 WP_050845845.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11057.89 Da        Isoelectric Point: 9.2201

>NTDB_id=1114260 AT683_RS00265 WP_021034778.1 55720..56007(-) (comQ) [Haemophilus influenzae strain NCTC8143]
MNKGMSLITLLFSLALFSVLFLVFNQWTAEQRKSAVKIYQDFQATQIAENQAQRQFLGLACEQLIQQNGLTFRIRCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1114260 AT683_RS00265 WP_021034778.1 55720..56007(-) (comQ) [Haemophilus influenzae strain NCTC8143]
ATGAATAAAGGAATGTCTCTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAGAACAGCGAAAAAGTGCGGTAAAAATTTATCAAGATTTTCAGGCAACACAAATTGCAGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCGATGTGAAAATGAACGC
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

92.632

100

0.926

Multiple sequence alignment