Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AT682_RS07730 Genome accession   NZ_LN831025
Coordinates   1522433..1522744 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC11351     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1517433..1527744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT682_RS07710 (ERS445056_01590) ctsE 1518302..1519861 (-) 1560 WP_016818338.1 GspE/PulE family protein Machinery gene
  AT682_RS07715 (ERS445056_01591) ctsX 1519851..1520438 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  AT682_RS07720 (ERS445056_01592) ctsP 1520442..1521050 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  AT682_RS07725 (ERS445056_01593) ctsD 1521043..1522455 (-) 1413 WP_004306523.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AT682_RS07730 (ERS445056_01594) ctsR 1522433..1522744 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  AT682_RS07735 (ERS445056_01595) nifJ 1522768..1526328 (-) 3561 WP_004306526.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AT682_RS07740 (ERS445056_01596) - 1526421..1527062 (-) 642 WP_004306528.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=1114173 AT682_RS07730 WP_002862131.1 1522433..1522744(-) (ctsR) [Campylobacter jejuni strain NCTC11351]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1114173 AT682_RS07730 WP_002862131.1 1522433..1522744(-) (ctsR) [Campylobacter jejuni strain NCTC11351]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment