Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   AT682_RS07725 Genome accession   NZ_LN831025
Coordinates   1521043..1522455 (-) Length   470 a.a.
NCBI ID   WP_004306523.1    Uniprot ID   A0AAD2Z278
Organism   Campylobacter jejuni strain NCTC11351     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1516043..1527455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT682_RS07700 (ERS445056_01588) - 1516367..1517131 (+) 765 WP_004306514.1 TSUP family transporter -
  AT682_RS07705 (ERS445056_01589) ctsF 1517124..1518305 (-) 1182 WP_004306516.1 type II secretion system F family protein Machinery gene
  AT682_RS07710 (ERS445056_01590) ctsE 1518302..1519861 (-) 1560 WP_016818338.1 GspE/PulE family protein Machinery gene
  AT682_RS07715 (ERS445056_01591) ctsX 1519851..1520438 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  AT682_RS07720 (ERS445056_01592) ctsP 1520442..1521050 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  AT682_RS07725 (ERS445056_01593) ctsD 1521043..1522455 (-) 1413 WP_004306523.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AT682_RS07730 (ERS445056_01594) ctsR 1522433..1522744 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  AT682_RS07735 (ERS445056_01595) nifJ 1522768..1526328 (-) 3561 WP_004306526.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AT682_RS07740 (ERS445056_01596) - 1526421..1527062 (-) 642 WP_004306528.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53090.57 Da        Isoelectric Point: 6.4062

>NTDB_id=1114172 AT682_RS07725 WP_004306523.1 1521043..1522455(-) (ctsD) [Campylobacter jejuni strain NCTC11351]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIEESLDEFAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=1114172 AT682_RS07725 WP_004306523.1 1521043..1522455(-) (ctsD) [Campylobacter jejuni strain NCTC11351]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATAGAAGAAAGTCTTGATGAGTTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAATTCTGTCAATATTCATCAAATGAGTTTGGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGATGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATTGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.149

100

0.991

Multiple sequence alignment