Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   XNC2_RS17785 Genome accession   NZ_LN681227
Coordinates   4046668..4048101 (+) Length   477 a.a.
NCBI ID   WP_013185525.1    Uniprot ID   D3VDI1
Organism   Xenorhabdus nematophila AN6/1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4041668..4053101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XNC2_RS17755 (XNC2_4044) - 4042030..4043016 (+) 987 WP_010847746.1 calcium/sodium antiporter -
  XNC2_RS17760 (XNC2_4045) kdsD 4043055..4044023 (+) 969 WP_010847745.1 arabinose-5-phosphate isomerase KdsD -
  XNC2_RS17765 (XNC2_4046) kdsC 4044163..4044726 (+) 564 WP_010847744.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  XNC2_RS17770 (XNC2_4047) lptC 4044744..4045337 (+) 594 WP_010847743.1 LPS export ABC transporter periplasmic protein LptC -
  XNC2_RS17775 (XNC2_4048) lptA 4045318..4045866 (+) 549 WP_010847742.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  XNC2_RS17780 (XNC2_4049) lptB 4045873..4046598 (+) 726 WP_013185524.1 LPS export ABC transporter ATP-binding protein -
  XNC2_RS17785 (XNC2_4050) rpoN/rpoN1 4046668..4048101 (+) 1434 WP_013185525.1 RNA polymerase factor sigma-54 Machinery gene
  XNC2_RS17790 (XNC2_4051) hpf 4048125..4048412 (+) 288 WP_010847739.1 ribosome hibernation promoting factor -
  XNC2_RS17795 (XNC2_4052) ptsN 4048527..4048994 (+) 468 WP_013185526.1 PTS IIA-like nitrogen regulatory protein PtsN -
  XNC2_RS17800 (XNC2_4053) rapZ 4049033..4049884 (+) 852 WP_010847736.1 RNase adapter RapZ -
  XNC2_RS17805 (XNC2_4054) npr 4049933..4050205 (+) 273 WP_010847735.1 PTS phosphocarrier protein NPr -
  XNC2_RS17810 (XNC2_4055) cynS 4050324..4050794 (-) 471 WP_013185527.1 cyanase -
  XNC2_RS17815 (XNC2_4056) cynR 4050925..4051797 (+) 873 WP_013185528.1 transcriptional regulator CynR -
  XNC2_RS17820 (XNC2_4057) - 4051879..4052919 (+) 1041 WP_013141539.1 IS481 family transposase -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54231.34 Da        Isoelectric Point: 4.4933

>NTDB_id=1113957 XNC2_RS17785 WP_013185525.1 4046668..4048101(+) (rpoN/rpoN1) [Xenorhabdus nematophila AN6/1]
MKQSLQLRLSQQLTMTPQLQQAIRLLQLSTLELQQEIQQALETNPLLEQDELHREVENPDPPATEVMDAREALEQKDMPE
ELPLDTSWDEIYTAGLSSGSHSDYDADDFPVYQGETTQTLQDYLMWQAGLTPFTETDTAIATAIIDAIDDSGYLTVSTEE
ILISLGDDELALEEVEAVLKRIQHFDPIGVAARDLRECLFIQLSMLPPQTRYLDDAKLVVNKYLELLGNRDFRNLLRQSK
LKENVLKEAIDIIQSLEPKPGLIVNTSESEYVIPDVLIQKENESWQVRLNTDSIPRLRINQHYAALGQQAHNESDSLFIR
NNLQEAKWLIKSLESRNETLLKVARCIAERQQDFFEYGEEHMKPLVLADIAYQVDMHESTISRVTTQKYLYSPRGIFELK
YFFSSHVNTDSGGEASSTAIRALVKKLVAAENPAKPLSDSKLTSMLVEQGIQVARRTVAKYRESLSIPPSNQRKKLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=1113957 XNC2_RS17785 WP_013185525.1 4046668..4048101(+) (rpoN/rpoN1) [Xenorhabdus nematophila AN6/1]
ATGAAGCAAAGTTTACAACTTAGGCTCAGCCAACAACTGACAATGACGCCCCAGCTCCAGCAAGCAATACGTTTGTTGCA
ACTTTCCACGCTTGAACTTCAGCAGGAAATTCAACAAGCTCTGGAAACCAATCCACTGCTTGAGCAAGATGAACTGCATC
GGGAAGTGGAGAATCCAGATCCCCCTGCAACCGAAGTCATGGATGCCCGCGAAGCGCTTGAACAGAAAGATATGCCGGAA
GAGCTGCCACTGGATACCAGTTGGGATGAAATTTATACTGCCGGCCTGTCTTCAGGAAGCCACAGTGATTACGATGCTGA
TGACTTTCCCGTTTATCAGGGAGAAACCACCCAGACTCTCCAGGACTATCTTATGTGGCAGGCAGGGTTAACGCCGTTTA
CTGAAACGGATACTGCCATTGCCACTGCGATCATTGATGCAATTGATGATAGTGGCTATCTGACTGTTTCCACCGAGGAG
ATCCTGATCAGCCTTGGTGATGATGAACTGGCACTGGAAGAAGTCGAGGCCGTTCTTAAGCGCATACAGCATTTTGACCC
TATTGGCGTCGCTGCCCGTGATTTGCGCGAATGCCTGTTCATCCAACTTTCCATGTTACCGCCGCAAACACGTTATCTGG
ACGATGCCAAACTCGTCGTTAACAAGTATCTCGAACTGCTGGGGAATCGGGACTTCCGTAATTTATTACGCCAGAGCAAA
TTAAAAGAAAACGTTCTGAAAGAAGCCATTGATATTATTCAATCACTGGAGCCGAAACCGGGATTGATAGTCAATACCAG
CGAATCCGAGTATGTTATTCCCGATGTACTGATACAGAAAGAAAATGAAAGCTGGCAAGTCAGACTAAATACCGATAGCA
TCCCCCGCCTGCGTATCAACCAGCACTACGCAGCGTTGGGACAACAGGCACATAATGAGAGTGATAGCCTGTTCATTCGC
AATAACTTACAAGAAGCCAAATGGCTGATAAAAAGTCTCGAAAGCCGTAATGAGACTTTGTTAAAAGTCGCACGCTGCAT
TGCTGAACGGCAACAGGACTTTTTTGAGTATGGGGAAGAGCATATGAAACCGCTGGTACTGGCCGATATTGCCTATCAGG
TTGATATGCATGAATCTACCATTTCACGTGTGACAACCCAGAAGTATCTGTATAGTCCACGAGGCATTTTTGAGCTTAAA
TATTTTTTCTCCAGTCATGTGAATACCGATAGCGGGGGTGAAGCCTCTTCTACCGCAATACGTGCCCTGGTGAAAAAACT
GGTCGCGGCAGAAAACCCGGCCAAGCCTCTGAGTGACAGTAAATTAACCAGCATGCTGGTTGAACAAGGCATTCAGGTGG
CACGTCGGACTGTCGCAAAATATAGAGAGTCGTTATCCATCCCGCCTTCGAACCAACGTAAAAAACTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(318-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3VDI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.652

100

0.484

Multiple sequence alignment