Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DR76_RS10395 Genome accession   NZ_CP009072
Coordinates   2135623..2136360 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli ATCC 25922     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2130623..2141360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR76_RS10365 (DR76_1994) yfiL 2130782..2131147 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  DR76_RS10370 (DR76_1995) aroF 2131357..2132427 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  DR76_RS10375 (DR76_1996) tyrA 2132438..2133559 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  DR76_RS10380 (DR76_1997) pheA 2133602..2134762 (-) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  DR76_RS29000 pheL 2134861..2134908 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  DR76_RS10385 (DR76_1998) raiA 2135012..2135353 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  DR76_RS10395 (DR76_1999) comL 2135623..2136360 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  DR76_RS10400 (DR76_2000) rluD 2136495..2137475 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DR76_RS10405 (DR76_2001) yfiH 2137472..2138203 (+) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  DR76_RS10410 (DR76_2002) clpC 2138333..2140906 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=111390 DR76_RS10395 WP_000197686.1 2135623..2136360(-) (comL) [Escherichia coli ATCC 25922]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=111390 DR76_RS10395 WP_000197686.1 2135623..2136360(-) (comL) [Escherichia coli ATCC 25922]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376